D_E
(Package: GeoGenetix) :
Matrix of environmental distances
Matrix of environmental distances
● Data Source:
CranContrib
● Keywords:
● Alias: D_E
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GeoGenetix-package
(Package: GeoGenetix) :
Inference and model selection for analysis of geographical
MCMC inference and model selection by cross-validation for the analysis of geographical genetic variation
● Data Source:
CranContrib
● Keywords: package
● Alias: GeoGenetix, GeoGenetix-package
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TangleInferenceGauss
(Package: GeoGenetix) :
Inference in Tangle package under the Gaussian approximation
Computes the mean squared cross validation error using leave-one-out cross validaton for each of the three models "e+g", "e" and "g". Prediction is performed using linear projection based on the normal assumption.
● Data Source:
CranContrib
● Keywords: Cross-validation, Gaussian approximation
● Alias: TangleInferenceGauss
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D_G
(Package: GeoGenetix) :
Matrix of geographical distances
Matrix of geographical distances
● Data Source:
CranContrib
● Keywords:
● Alias: D_G
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Reformat data from the 2-way table format (containing allelic states) to the 3-way table format (containing counts of the various alellic states)
● Data Source:
CranContrib
● Keywords: Data format
● Alias: Reformat23
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TangleInference
(Package: GeoGenetix) :
Inference and model selection for analysis of geographical
MCMC inference and model selection by cross-validation for the analysis of geographical genetic variation
● Data Source:
CranContrib
● Keywords: MCMC inference, Model selection
● Alias: TangleInference
●
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Reformat data from the 3-way table format (containing counts of the various alellic states) to the 2-way table format (containing allelic states)
● Data Source:
CranContrib
● Keywords: Data format
● Alias: Reformat32
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gen
(Package: GeoGenetix) :
An array of allele counts
An array of allele counts in the format suitable for the inference functions
● Data Source:
CranContrib
● Keywords:
● Alias: gen
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Simulate data under the model assumed by the MCMC inference program
● Data Source:
CranContrib
● Keywords: Covariance function, Random field
● Alias: SimTangleData
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