Uses fecundity object, and environmental transition objects to construct a matrix defining probabilities for transitions between sizes due to fecundity given both a continuous state (e.g. size) and environmental state, as well as a discrete stage if necessary (e.g. seedbank). NOTE - old createCompoundFmatrix is being deprecated; use makeCompoundFmatrix instead.
● Data Source:
CranContrib
● Keywords:
● Alias: createCompoundFmatrix, makeCompoundFmatrix
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Function to define deviance of a Hossfeld function for use with optim to generate a Hossfeld growth object.
● Data Source:
CranContrib
● Keywords:
● Alias: wrapHossfeld
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Functional form describing growth according to a Hossfeld function.
● Data Source:
CranContrib
● Keywords:
● Alias: Hossfeld
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Function to take a P matrix (either compound or not) and estimate variance in passage time to a chosen continuous stage value.
● Data Source:
CranContrib
● Keywords:
● Alias: varPassageTime
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Increases bin number by a specified binIncrease until the difference in the chosen measure falls below a tolerance level
● Data Source:
CranContrib
● Keywords:
● Alias: convergeIPM
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Wrapper function to build the IPM corresponding to every level of the discrete covariate, and return a list of these.
● Data Source:
CranContrib
● Keywords: ~kwd1, ~kwd2
● Alias: .makeListIPMs, sampleSequentialIPMs
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Matrix defining transitions between discrete stages; slots define the names of stages, etc.
● Data Source:
CranContrib
● Keywords: classes
● Alias: discreteTransInteger-class
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A class object description
● Data Source:
CranContrib
● Keywords: classes
● Alias: growthObjTruncIncr-class
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Learn about recent changes to IPMpack.
● Data Source:
CranContrib
● Keywords:
● Alias: IPMpackNews
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Calculates the fraction of the cohort surviving across age for a chosen starting continuous stage value.
● Data Source:
CranContrib
● Keywords:
● Alias: survivorship
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