R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 4 of 4 found.
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LSPFP-package (Package: LSPFP) :

Sexpr[results=rd,stage=build]{tools:::Rd_package_description("LSPFP")}

Details

The DESCRIPTION file: Sexpr[results=rd,stage=build]{tools:::Rd_package_DESCRIPTION("LSPFP")} Sexpr[results=rd,stage=build]{tools:::Rd_package_indices("LSPFP")}

● Data Source: CranContrib
● Keywords: package
● Alias: LSPFP, LSPFP-package
● 0 images

printSelectedPeptides (Package: LSPFP) :

This function allows printing of different peptide plots after running wrapperLSPFP once.

● Data Source: CranContrib
● Keywords: ~kwd1, ~kwd2
● Alias: printSelectedPeptides
● 0 images

LSPFP-internal (Package: LSPFP) :

Internal LSPFP functions.

● Data Source: CranContrib
● Keywords: internal
● Alias: LoadExp, bdown, createFeatureTable, createNewExp, create_countintensematrix, detectTerminal, fasta2rds, getAttributeField, getExperimentSourceFiles, getPositions, getTopofeatures, gff2rds, gffRead, loadData, localfasta2rds, localgff2rds, lspfp_getFastaInformation, mylogisfunc, openCSV, openProgress, openTXT, peptide_filter, print_peptides, print_topoareas, secscoring, setDirStruc, ss_openCSV, ss_openTXT, truncscoring, wrapperPLM, wrapperSecScore
● 0 images

wrapperLSPFP (Package: LSPFP) :

This function plots the positions of peptides with associated proteins from shotgun proteomics data from MaxQuant or Progenesis as input. The plots contain informations about: intensity, position, protein structure, location of protein domains, genename, protein accession, secretion score and truncation score. The plots are written to a PDF file and a data.frame containing protein feature information is saved as a rds-file and csv-file.

● Data Source: CranContrib
● Keywords: ~kwd1, ~kwd2
● Alias: wrapperLSPFP
● 0 images