R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 16 found.
[1] < 1 2 > [2] Sort:

MANOR-internal (Package: MANOR) : Internal Functions for MANOR Package

Internal functions not intended for direct calls by user.

● Data Source: BioConductor
● Keywords: internal
● Alias: MANOR-internal, add.lines, arrayCGH2txt, center, check.names, chrom, cv, flag.aggregate.arrayCGH, getChromosomeArm, intensity.plot, my.aggregate.data.frame, num.chromosome.flag, print.flag, rename, replicate.aux, spot.corr.flag, w
● 0 images

arrayTrend (Package: MANOR) : Spatial trend of microarray spots statistic

The function arrayTrend computes the spatial trend.

● Data Source: BioConductor
● Keywords: loess, smooth, spatial
● Alias: arrayTrend, arrayTrend.arrayCGH, arrayTrend.default
● 1 images

detectSB (Package: MANOR) : Spatial bias detection

This function detects spatial bias on array CGH.

● Data Source: BioConductor
● Keywords: models, spatial
● Alias: detectSB, detectSB.arrayCGH, detectSB.default
● 2 images

flag.arrayCGH (Package: MANOR) : Apply a flag to an arrayCGH

Function flag$FUN is applied to a flag object for normalization

● Data Source: BioConductor
● Keywords: misc
● Alias: flag, flag.arrayCGH
● 0 images

flag.summary (Package: MANOR) : Summarize information about flags after array normalization

Compute spot-level information (number of flagged spots, normalization parameters), and display it in a convenient way

● Data Source: BioConductor
● Keywords: misc
● Alias: flag.summary, flag.summary.arrayCGH, flag.summary.default
● 0 images

genome.plot (Package: MANOR) : Pan-genomic representation of a normalized arrayCGH

Displays a pan-genomic representation of a normalized arrayCGH.

● Data Source: BioConductor
● Keywords: hplot
● Alias: genome.plot, genome.plot.arrayCGH, genome.plot.default
● 0 images

html.report (Package: MANOR) : Generate an HTML report of array normalization

Create an HTML file with various illustrations of array normalization, including plots before and after normalization, and statistics about flagged spots and clones

● Data Source: BioConductor
● Keywords: IO
● Alias: html.report, html.report.arrayCGH, html.report.default
● 0 images

import (Package: MANOR) : Import raw file to an arrayCGH object

Load raw data from a text file coming from image analysis and convert it to an arrayCGH object, using additional information about the array design.

● Data Source: BioConductor
● Keywords: IO, file
● Alias: import, import.default.aux, import.gpr.aux, import.spot.aux
● 0 images

nem (Package: MANOR) : Spatial Classification by EM algorithm

The function nem computes spatial classification by EM algorithm.

● Data Source: BioConductor
● Keywords: models, spatial
● Alias: nem, nem.arrayCGH, nem.default
● 0 images

norm (Package: MANOR) : Normalize an object of type arrayCGH

Normalize an object of type arrayCGH using a list of criteria specified as (temporary or permanent) flags. If a replicate identifier (clone name) is provided, a single target value is computed for all the replicates.

● Data Source: BioConductor
● Keywords: models
● Alias: MANOR, norm, norm.arrayCGH
● 2 images