MLP
(Package: MLP) :
This function calculates p-values for each gene set based on row permutations
This function calculates p-values for each gene set based on row permutations of the gene p values or column permutations of the expression matrix; the p values can be obtained either as individual gene set p values or p values based on smoothing across gene sets of similar size.
● Data Source:
BioConductor
● Keywords:
● Alias: MLP
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addGeneSetDescription
(Package: MLP) :
Utility function which adds the biological description of the gene sets as
Utility function which adds the biological description of the gene sets as a column to the return value of the MLP function (data frame)
● Data Source:
BioConductor
● Keywords:
● Alias: addGeneSetDescription
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getGeneSets
(Package: MLP) :
Prepare Pathway Data for the MLP Function
The return value of the getGeneSets function has as primary use to serve as geneSet argument for the MLP function
● Data Source:
BioConductor
● Keywords:
● Alias: getGeneSets
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mlpBarplot
(Package: MLP) :
Draw a Barplot for MLP Results
Draw a Barplot for MLP Results
● Data Source:
BioConductor
● Keywords:
● Alias: mlpBarplot
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plot.MLP
(Package: MLP) :
Plot the Results of an MLP Run
Plot the Results of an MLP Run
● Data Source:
BioConductor
● Keywords:
● Alias: plot.MLP
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plotGOgraph
(Package: MLP) :
Graphical Representation of GO Based MLP Results
Graphical Representation of GO Based MLP Results
● Data Source:
BioConductor
● Keywords:
● Alias: plotGOgraph
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plotGeneSetSignificance
(Package: MLP) :
Plot the Significance for the Genes of a Given Gene Set
Plot the Significance for the Genes of a Given Gene Set
● Data Source:
BioConductor
● Keywords:
● Alias: plotGeneSetSignificance
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