R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 44 found.
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DNAcopyParam (Package: MinimumDistance) : Constructor for DNAcopyParam class

Creates an instance of a parameter class for circular binary segmentation of the minimum distance and the log R ratios. Parameters in this object are passed to the segment function in the package DNAcopy.

● Data Source: BioConductor
● Keywords:
● Alias: DNAcopyParam
● 0 images

Defunct (Package: MinimumDistance) : Defunct functions/classes/methods in the MinimumDistance package

The function, class, or data object you asked is defunct.

● Data Source: BioConductor
● Keywords: internal
● Alias: Defunct, coerce,RangedDataCNV,GRanges-class
● 0 images

offspringNames (Package: MinimumDistance) : Deprecated functions and methods

These functions will be defunct in a future release.

● Data Source: BioConductor
● Keywords:
● Alias: offspringNames, offspringNames<-, pedigree, pedigree<-, trios
● 0 images

FilterParamMD-class (Package: MinimumDistance) : A class for filtering genomic intervals called by MinimumDistance

Options for filtering include the number of markers spanned by a segment, the posterior probability of the maximum a posteriori estimate of the trio copy number state, and the trio copy number state.

● Data Source: BioConductor
● Keywords:
● Alias: FilterParamMD-class, show,FilterParamMD-method
● 0 images

FilterParamMD (Package: MinimumDistance) : Parameters for filtering results from the segmentation and copy number inference

A container for criteria used to filter the segmentation results post-hoc. Options including filtering on the posterior call, the posterior probability of the posterior call, the minimum number of markers spanned by the segment, the minimum width of the segment, and chromosome. Convenience functions are available for commonly used filters.

● Data Source: BioConductor
● Keywords:
● Alias: FilterParamMD
● 0 images

MAP (Package: MinimumDistance) : Computes the maximum a posteriori trio copy number state for the

This functions is deprecated and will be defunct in a future release. The replacement function is MAP2.

● Data Source: BioConductor
● Keywords:
● Alias: MAP
● 0 images

MAP2 (Package: MinimumDistance) : Computes maximum a posteriori estimate for the trio copy number state

Computes maximum a posteriori estimate for the trio copy number state

● Data Source: BioConductor
● Keywords:
● Alias: MAP2, MAP2,MinDistExperiment,GRanges-method, MAP2,MinDistExperiment,GRangesList-method, MAP2,MinDistExperiment,MinDistGRanges-method
● 0 images

MDRanges-class (Package: MinimumDistance) : A code{GRanges

Contains maximum a posteriori estimates for each genomic interval

● Data Source: BioConductor
● Keywords:
● Alias: MDRanges, MDRanges-class, reduce,MDRanges-method
● 0 images

MinDistExperiment-class (Package: MinimumDistance) : Class and methods for MinDistExperiment

Class and methods for MinDistExperiment

● Data Source: BioConductor
● Keywords:
● Alias: MinDistExperiment-class, [,MinDistExperiment,ANY,ANY,ANY-method, father,MinDistExperiment-method, father,RangedSummarizedExperiment-method, mindist,MinDistExperiment-method, mindist<-,MinDistExperiment,ANY-method, mother,MinDistExperiment-method, mother,RangedSummarizedExperiment-method, offspring,MinDistExperiment-method, offspring,RangedSummarizedExperiment-method, pedigree,MinDistExperiment-method, pedigree<-,MinDistExperiment-method, segment2,MinDistExperiment-method, show,MinDistExperiment-method
● 0 images

MinDistExperiment (Package: MinimumDistance) : Constructor for code{MinDistExperiment

Constructor for MinDistExperiment class

● Data Source: BioConductor
● Keywords:
● Alias: MinDistExperiment, MinDistExperiment,ArrayViews,ParentOffspring-method
● 0 images