R Graphical Manual

Last data update: 2014.03.03

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Classification

Results 1 - 10 of 30 found.
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FOXA1_rGADEM (Package: MotIV) : Dataset for FOXA1

This dataset contains results obtained by rGADEM for the FOXA1 transcription factor.

● Data Source: BioConductor
● Keywords: misc
● Alias: FOXA, FOXA1_rGADEM, gadem
● 0 images

alignments-class (Package: MotIV) : Class "alignments"

This object contains the alignments found by a MotIV analysis.

● Data Source: BioConductor
● Keywords: classes
● Alias: alignments-class
● 0 images

as.data.frame (Package: MotIV) : Coerce to a Data Frame

This function coerces a MotIV object into a data frame.

● Data Source: BioConductor
● Keywords: methods
● Alias: as.data.frame, as.data.frame,motiv-method, as.data.frame-methods
● 0 images

combineMotifs (Package: MotIV) : Combine Motifs

This function combines motifs according to a set of filters.

● Data Source: BioConductor
● Keywords: methods
● Alias: combineMotifs, combineMotifs,motiv,filters-method, combineMotifs,motiv,list-method, combineMotifs-method
● 0 images

exportAsRangedData (Package: MotIV) : Export MotIV Results

Export your

● Data Source: BioConductor
● Keywords: misc
● Alias: exportAsRangedData
● 0 images

exportAsTransfacFile (Package: MotIV) : Write Transfac Files

Export an object of class motiv as a Transfac file type.

● Data Source: BioConductor
● Keywords: misc
● Alias: exportAsTransfacFile, exportAsTransfacFile,list-method, exportAsTransfacFile,motiv-method, exportAsTransfacFile-methods
● 0 images

filter-class (Package: MotIV) : Class "filter"

This object information to be apply as filter.

● Data Source: BioConductor
● Keywords: classes
● Alias: filter-class
● 0 images

filters-methods (Package: MotIV) : Filters Methods

Methods for filters object

● Data Source: BioConductor
● Keywords: classes
● Alias: &,filters,filters-method, names,filter-method, names,filters-method, show,filter-method, summary,filter-method, summary,filters-method, |,filters,filters-method
● 0 images

filter (Package: MotIV) : Filter Motifs

This function selects motifs according to a set of filters.

● Data Source: BioConductor
● Keywords: methods
● Alias: filter, filter,motiv,filters-method, filter,motiv,list-method, filter-methods
● 0 images

generateDBScores (Package: MotIV) : Database Scores Functions

This functions are used to generate scores of a PWM database.

● Data Source: BioConductor
● Keywords: misc
● Alias: generateDBScores, readDBScores, writeDBScores
● 0 images