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The function fits a three-beta mixture model to functional association scores computed from rich phenotyping screens in Wang X et al., 2012 for RNAi screening data of Ewing's sarcoma in Arora S et al., 2010.
● Data Source:
BioConductor
● Keywords:
● Alias: Arora2010.BMfitting
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The function infers a functional association network given an object of class BetaMixture that has been fitted.
● Data Source:
BioConductor
● Keywords:
● Alias: Arora2010.InferPAN
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This function invokes pvclustModule to search for enriched functional gene modules by hierarchical clustering with multiscale bootstrap resampling (using R package pvclust).
● Data Source:
BioConductor
● Keywords:
● Alias: Arora2010.ModuleSearchByPvclust
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This is a pipeline function for the user to reproduce the main figures regarding network analyses in Wang X et al., 2012 for RNAi screening data of Ewing's sarcoma in Arora S et al., 2010.
● Data Source:
BioConductor
● Keywords:
● Alias: Arora2010.fig
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The function is used to perform hypergeometric tests of overrepresentation of KEGG pathways in inferred functional modules in the application to Ewing's sarcoma.
● Data Source:
BioConductor
● Keywords:
● Alias: Arora2010.hypergeo
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The function represent inferred significant functional modules in RedeR, which is a bioconductor package for network visualization.
● Data Source:
BioConductor
● Keywords:
● Alias: Arora2010.module.visualize
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This pipeline function reproducing results in Wang X et al., 2012 for RNAi screening data of Ewing's sarcoma in Arora S et al., 2010.
● Data Source:
BioConductor
● Keywords:
● Alias: Arora2010.pipeline
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The function invokes functions in R package HTSanalyzeR to plot results of enrichment analysis of functional interactions for protein-protein interactions.
● Data Source:
BioConductor
● Keywords:
● Alias: GSEARandomWalkFig
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The function fits a three-beta mixture model to functional association scores computed from rich phenotyping screens in Mulder K et al., 2012 and Wang X et al., 2012.
● Data Source:
BioConductor
● Keywords:
● Alias: Mulder2012.BMfitting, Mulder2012.BMfitting.extended
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The function infers a functional association network given an object of class BetaMixture that has been fitted.
● Data Source:
BioConductor
● Keywords:
● Alias: Mulder2012.InferPAN
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providing 
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