This is a wrapper for searching pairs of protein sequences by UniProt EntryName, digesting both sequences with trypsin, find homologous parts, remove duplicates, build a new sequence out of them and write the result into a FASTA file, that can be used for further analysis (e.g. compare to mass spectrometry results).
snvToPepFasta
(Package: PepPrep) :
Single nucleotide variant (SNV) to peptide workflow
This is a wrapper for the whole computing of SNV mutations into transcripts, digest these transcripts into small peptides and write the result into a FASTA file, that can be used for further analysis (e.g. compare to mass spectrometry results).