R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 10 of 32 found.
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procona-package (Package: ProCoNA) : Peptide co-expression network construction.

Peptide co-expression network construction, analysis, and visualization.

● Data Source: BioConductor
● Keywords: package
● Alias: procona-package
● 0 images

proconaNet-class (Package: ProCoNA) : proconaNet S4 class

The main ProCoNA object - holder of data.

● Data Source: BioConductor
● Keywords:
● Alias: proconaNet, proconaNet-class
● 0 images

proconaVersionFun (Package: ProCoNA) : Procona Software Version

Returns the current version of the software.

● Data Source: BioConductor
● Keywords:
● Alias: proconaVersionFun
● 0 images

runningStats (Package: ProCoNA) : runningStats

Computing the running mean and variance

● Data Source: BioConductor
● Keywords:
● Alias: runningStats
● 0 images

subsetModCors (Package: ProCoNA) : subsetModCors

subsets the module-phenotype correlation matrix which has funny rownames

● Data Source: BioConductor
● Keywords:
● Alias: subsetModCors
● 0 images

subsetPeptideData (Package: ProCoNA) : subsetPeptideData

Given a matrix of peptide data, omit columns with excess missing data, specified by NAs.

● Data Source: BioConductor
● Keywords:
● Alias: subsetPeptideData
● 0 images

toPermTest (Package: ProCoNA) : toPermTest

Uses the procona network object, the data with peptides as columns, samples in rows. And the power that the net was built at the number of permutations to do... Modules are permuted and mean topological overlap is recorded, constructing the null. The number of random permutations with mean TO greater than observed provides the p-value.

● Data Source: BioConductor
● Keywords:
● Alias: toPermTest, toPermTest,proconaNet,numeric-method
● 0 images

utri (Package: ProCoNA) : utri

The upper triangle of a matrix

● Data Source: BioConductor
● Keywords:
● Alias: utri
● 0 images

MMvsPS (Package: ProCoNA) : Module members vs Peptide Significance

Plots the module membership (correlation to eigenvector) against the peptide significance (correlation to phenotype) for a given trait and module

● Data Source: BioConductor
● Keywords:
● Alias: MMvsPS, MMvsPS,proconaNet,matrix,numeric,numeric-method
● 1 images

MMvsPSallModules (Package: ProCoNA) : MMvsPSallModules

Call MMvsPS, producing plots for all modules.

● Data Source: BioConductor
● Keywords:
● Alias: MMvsPSallModules, MMvsPSallModules,proconaNet,matrix,numeric,character-method
● 0 images