R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 180 found.
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setDefaultNodeReverseSelectionColor (Package: RCytoscape) : setDefaultNodeReverseSelectionColor

Retrieve the default color used to display selected nodes.

● Data Source: BioConductor
● Keywords: graph
● Alias: setDefaultNodeReverseSelectionColor, setDefaultNodeReverseSelectionColor,CytoscapeConnectionClass-method
● 0 images

setDefaultNodeSelectionColor (Package: RCytoscape) : setDefaultNodeSelectionColor

Retrieve the default color used to display selected nodes.

● Data Source: BioConductor
● Keywords: graph
● Alias: setDefaultNodeSelectionColor, setDefaultNodeSelectionColor,CytoscapeConnectionClass-method
● 0 images

setDefaultNodeShape (Package: RCytoscape) : setDefaultNodeShape

For all CytoscapeWindow's, specify the default node shape.

● Data Source: BioConductor
● Keywords: graph
● Alias: setDefaultNodeShape, setDefaultNodeShape,CytoscapeConnectionClass-method
● 0 images

setDefaultNodeSize (Package: RCytoscape) : setDefaultNodeSize

In the specified CytoscapeConnection, stipulate the color for all nodeBorders other than those mentioned in a node border color rule.

● Data Source: BioConductor
● Keywords: graph
● Alias: setDefaultNodeSize, setDefaultNodeSize,CytoscapeConnectionClass-method
● 0 images

setEdgeAttributes (Package: RCytoscape) : setEdgeAttributes

Transfer the named edge attribute from the the R graph (found in obj@graph) to Cytoscape. This method is typically called by displayGraph, which will suffice for most users' needs. It transfers the specified edge attributes, for all edges, from the cw@graph slot to Cytoscape.

● Data Source: BioConductor
● Keywords: graph
● Alias: setEdgeAttributes, setEdgeAttributes,CytoscapeWindowClass-method
● 0 images

setEdgeAttributesDirect (Package: RCytoscape) : setEdgeAttributesDirect

Transfer the named edge attribute to Cytoscape. This method is required, for instance, if you wish to run a 'movie.' For example, if you have a timecourse experiment, with different values at successive time points of the 'phosphorylates' or 'binds' relationship between two nodes. With an edgeColor rule already specified, you can animate the display of the edges in the graph by pumping new values of the edge attributes, and then asking for a redraw. An example of such edge-attribute-driven animation can be found here....[todo].

● Data Source: BioConductor
● Keywords: graph
● Alias: setEdgeAttributesDirect, setEdgeAttributesDirect,CytoscapeWindowClass-method
● 0 images

setEdgeColorDirect (Package: RCytoscape) : setEdgeColorDirect

In the specified CytoscapeWindow, set the color of the specified edge or edges.

● Data Source: BioConductor
● Keywords: graph
● Alias: setEdgeColorDirect, setEdgeColorDirect,CytoscapeWindowClass-method
● 0 images

setEdgeColorRule (Package: RCytoscape) : setEdgeColorRule

Specify how data attributes – for the specified named attribute – is mapped to edge color.

● Data Source: BioConductor
● Keywords: graph
● Alias: setEdgeColorRule, setEdgeColorRule,CytoscapeWindowClass-method
● 0 images

setEdgeFontSizeDirect (Package: RCytoscape) : setEdgeFontSizeDirect

In the specified CytoscapeWindow, set the opacity of the specified edge or edges. Low numbers, near zero, are transparent. High numbers, near 255, are maximally opaque: they are fully visible.

● Data Source: BioConductor
● Keywords: graph
● Alias: setEdgeFontSizeDirect, setEdgeFontSizeDirect,CytoscapeWindowClass-method
● 0 images

setEdgeLabelColorDirect (Package: RCytoscape) : setEdgeLabelColorDirect

In the specified CytoscapeWindow, set the labelColor of the specified edge or edges. Low numbers, near zero, are transparent. High numbers, near 255, are maximally opaque: they are fully visible.

● Data Source: BioConductor
● Keywords: graph
● Alias: setEdgeLabelColorDirect, setEdgeLabelColorDirect,CytoscapeWindowClass-method
● 0 images