R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 28 found.
[1] < 1 2 3 > [3] Sort:

RNAinteract-class (Package: RNAinteract) : Class "RNAinteract"

A class for double perturbation experiments (genetic interaction screens, drug-drug interaction screens). There are functions for creation, analysis, and display of interaction screens.

● Data Source: BioConductor
● Keywords: classes
● Alias: RNAinteract-class, show,RNAinteract-method
● 0 images

RNAinteract-package (Package: RNAinteract) : Analysis of Pairwise Interaction Screens.

The package contains functions to organize the data from (single- and multi-parametric) genetic interaction screens. Methods to estimate main effects (single perturbation effects) and pairwise interactions. p-values are computed. Furthermore a comprehensive html-report is generated.

● Data Source: BioConductor
● Keywords: package
● Alias: RNAinteract, RNAinteract-package
● 0 images

bindscreens (Package: RNAinteract) :

Bind two RNAinteract objects along screens.

● Data Source: BioConductor
● Keywords: manip
● Alias: bindscreens
● 0 images

computePI (Package: RNAinteract) :

Compute the pairwise interaction term for each single experiments.

● Data Source: BioConductor
● Keywords: manip
● Alias: computePI
● 0 images

computePValues (Package: RNAinteract) :

Compute p-values for genetic interactions terms. Assess if genetic interaction term is different from zero.

● Data Source: BioConductor
● Keywords: htest, manip, multivariate
● Alias: computePValues
● 0 images

createCellHTSFromFiles (Package: RNAinteract) :

A cellHTS2 object is created from a set of text files.

● Data Source: BioConductor
● Keywords: manip
● Alias: createCellHTSFromFiles
● 0 images

createRNAinteract (Package: RNAinteract) :

Creates a RNAinteract object given data matrices, annotation, query and template design.

● Data Source: BioConductor
● Keywords: manip
● Alias: createRNAinteract
● 0 images

createRNAinteractFromFiles (Package: RNAinteract) :

Reads text files with annotation, query and template design, and data. Creates a RNAinteract object.

● Data Source: BioConductor
● Keywords: manip
● Alias: createRNAinteractFromFiles
● 0 images

embedPCA (Package: RNAinteract) :

A principal component analysis is performed for a pairwise interaction matrix. The low-dimensional embedding is returned.

● Data Source: BioConductor
● Keywords: manip
● Alias: embedPCA
● 1 images

estimateMainEffect (Package: RNAinteract) :

estimates the main effects in an additive model.

● Data Source: BioConductor
● Keywords: manip
● Alias: estimateMainEffect
● 0 images