R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 25 found.
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Summary,peRes-method (Package: ROntoTools) : Summarize the results of a Pathway-Express analysis

Summarize the results of a Pathway-Express analysis

● Data Source: BioConductor
● Keywords:
● Alias: Summary,peRes-method
● 0 images

alpha1MR (Package: ROntoTools) : Compute alpha weights

Transform a vector of p-values into weights.

● Data Source: BioConductor
● Keywords:
● Alias: alpha1MR
● 0 images

alphaMLG (Package: ROntoTools) : Compute alpha weights

Transform a vector of p-values into weights.

● Data Source: BioConductor
● Keywords:
● Alias: alphaMLG
● 0 images

compute.fisher (Package: ROntoTools) : Combine independent p-values using the Fisher method

Combine independent p-values using the Fisher method

● Data Source: BioConductor
● Keywords:
● Alias: compute.fisher
● 0 images

compute.normalInv (Package: ROntoTools) : Combine independent p-values using the normal inversion method

Combine independent p-values using the normal inversion method

● Data Source: BioConductor
● Keywords:
● Alias: compute.normalInv
● 0 images

keggPathwayGraphs (Package: ROntoTools) : Download and parse KEGG pathway data

Download and parse KEGG pathway data

● Data Source: BioConductor
● Keywords:
● Alias: keggPathwayGraphs
● 0 images

keggPathwayNames (Package: ROntoTools) : Obtain KEGG pathway titles

Obtain KEGG pathway titles

● Data Source: BioConductor
● Keywords:
● Alias: keggPathwayNames
● 0 images

nodeWeights (Package: ROntoTools) : Retrieve the node weights of a graph

A generic function that returns the node weights of a graph. If index is specified, only the weights of the specified nodes are returned. The user can control which node attribute is interpreted as the weight.

● Data Source: BioConductor
● Keywords:
● Alias: nodeWeights, nodeWeights,graph,character-method, nodeWeights,graph,missing-method, nodeWeights,graph,numeric-method
● 0 images

pDis (Package: ROntoTools) : Primary dis-regulation: Pathway analysis approach based on the unexplained dis-regulation of genes

Primary dis-regulation: Pathway analysis approach based on the unexplained dis-regulation of genes

● Data Source: BioConductor
● Keywords:
● Alias: pDis
● 0 images

pDisPathway-class (Package: ROntoTools) : Class that encodes the result of pDis analysis for a single pathway

Class that encodes the result of pDis analysis for a single pathway

● Data Source: BioConductor
● Keywords:
● Alias: pDisPathway-class
● 0 images