R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 24 found.
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getMutationRate (Package: RTCGAToolbox) : Make a table for mutation rate of each gene in the cohort

Make a table for mutation rate of each gene in the cohort

● Data Source: BioConductor
● Keywords:
● Alias: getMutationRate
● 0 images

getReport (Package: RTCGAToolbox) : Draws a circle plot into working directory

getReport draws a circle plot into your workin director to show log fold changes for differentially expressed genes, copy number alterations and mutations.

● Data Source: BioConductor
● Keywords:
● Alias: getReport
● 3 images

getSurvival (Package: RTCGAToolbox) : Perform survival analysis based on gene expression data

getSurvival draws a KM plot and show survival analysis results between groups that are defined by gene expression data

● Data Source: BioConductor
● Keywords:
● Alias: getSurvival
● 1 images

hg19.ucsc.gene.locations (Package: RTCGAToolbox) : Gene coordinates for circle plot.

A dataset containing the gene coordinates The variables are as follows:

● Data Source: BioConductor
● Keywords:
● Alias: hg19.ucsc.gene.locations
● 0 images

showResults,CorResult-method (Package: RTCGAToolbox) : Export toptable or correlation data frame

Export toptable or correlation data frame

● Data Source: BioConductor
● Keywords:
● Alias: showResults,CorResult,CorResult-method, showResults,CorResult-method
● 0 images

showResults,DGEResult-method (Package: RTCGAToolbox) : Export toptable or correlation data frame

Export toptable or correlation data frame

● Data Source: BioConductor
● Keywords:
● Alias: showResults,DGEResult,DGEResult-method, showResults,DGEResult-method
● 3 images

showResults (Package: RTCGAToolbox) : Export toptable or correlation data frame

Export toptable or correlation data frame

● Data Source: BioConductor
● Keywords:
● Alias: showResults
● 3 images

CorResult-class (Package: RTCGAToolbox) : An S4 class to store correlations between gene expression level and copy number data

An S4 class to store correlations between gene expression level and copy number data

● Data Source: BioConductor
● Keywords:
● Alias: CorResult-class
● 0 images

DGEResult-class (Package: RTCGAToolbox) : An S4 class to store differential gene expression results

An S4 class to store differential gene expression results

● Data Source: BioConductor
● Keywords:
● Alias: DGEResult-class
● 0 images

FirehoseCGHArray-class (Package: RTCGAToolbox) : An S4 class to store data from CGA platforms

An S4 class to store data from CGA platforms

● Data Source: BioConductor
● Keywords:
● Alias: FirehoseCGHArray-class
● 0 images