R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 28 found.
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GetRelMatrix (Package: RVPedigree) : Estimate relationship matrix based on pedigree or genomic data

Estimate relationship matrix based on pedigree or genomic data. This function can use either Plink files as input (for both pedigree-based and genomic relationship matrix calculation), or genetic data in GenABEL format (for genomic relationships).

● Data Source: CranContrib
● Keywords:
● Alias: GetRelMatrix
● 0 images

pvalue.ASKAT (Package: RVPedigree) : Compute p-value and score for the ASKAT method

Compute p-value and score for the ASKAT method

● Data Source: CranContrib
● Keywords: internal
● Alias: pvalue.ASKAT
● 0 images

Normality.test (Package: RVPedigree) : Test for normality of the trait/phenotype

Test for normality of the trait

● Data Source: CranContrib
● Keywords:
● Alias: Normality.test
● 0 images

Preparation.VCC (Package: RVPedigree) : Prepare for the VC-C methods

Prepare for the VC-C methods

● Data Source: CranContrib
● Keywords: internal
● Alias: Preparation.VCC
● 0 images

read.haplo.pedfile (Package: RVPedigree) : Read haplotype data, selected by region of interest, from PED files

Read haplotype data, selected by region of interest, from PED files (regular PLINK untransposed text files)

● Data Source: CranContrib
● Keywords: internal
● Alias: read.haplo.pedfile
● 0 images

Estim.H0.ASKAT (Package: RVPedigree) : Estimation of the variance components under the null model using the ASKAT method

Estimation of the variance components under the null model using the ASKAT method

● Data Source: CranContrib
● Keywords:
● Alias: Estim.H0.ASKAT
● 0 images

Get.G (Package: RVPedigree) : Create genotypes from haplotypes

Create genotypes from haplotypes

● Data Source: CranContrib
● Keywords: internal
● Alias: Get.G
● 0 images

perm.hap (Package: RVPedigree) : Permute haplotypes

Permute haplotypes

● Data Source: CranContrib
● Keywords: internal
● Alias: perm.hap
● 0 images

read.haplo.shapeit_haps (Package: RVPedigree) : Read haplotype data, selected by region of interest, from a .haps file

Read haplotype data, selected by region of interest, from a .haps file (regular ShapeIt output files)

● Data Source: CranContrib
● Keywords: internal
● Alias: read.haplo.shapeit_haps
● 0 images

RVPedigree (Package: RVPedigree) : RVPedigree main function

Main function of the RVPedigree package

● Data Source: CranContrib
● Keywords:
● Alias: RVPedigree
● 0 images