R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 30 found.
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deviance.RefFreeCellMix (Package: RefFreeEWAS) : deviance.RefFreeCellMix

Deviance method for objects of type RefFreeCellMix.

● Data Source: CranContrib
● Keywords:
● Alias: deviance.RefFreeCellMix
● 0 images

RefFreeEwasModel (Package: RefFreeEWAS) : Reference-Free EWAS Model

Reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types.

● Data Source: CranContrib
● Keywords: DNA methylation, EWAS, cell mixture, deconvolution, surrogate variable, svd
● Alias: RefFreeEwasModel
● 0 images

summary.BootRefFreeEwasModel (Package: RefFreeEWAS) : summary.BootRefFreeEwasModel

Summary method for objects of type BootRefFreeEwasModel; calculates bootstrap mean and standard deviation.

● Data Source: CranContrib
● Keywords:
● Alias: summary.BootRefFreeEwasModel
● 0 images

omnibusBoot (Package: RefFreeEWAS) : Bootstrap-based omnibus test of significance across all features

Support for bootstrap-based omnibus test of significance accounting for correlation.

● Data Source: CranContrib
● Keywords: bootstrap, kolmogorov-smirnov, omnibus
● Alias: omnibusBoot
● 0 images

rfEwasExampleTRUEMethDMR (Package: RefFreeEWAS) : True M matrix (cell-specific methylation values) used in simulation (for comparison purposes)

1000 x 4 matrix of beta values

● Data Source: CranContrib
● Keywords:
● Alias: rfEwasExampleTRUEMethDMR
● 0 images

RefFreeCellMixArrayDevianceBoot (Package: RefFreeEWAS) : RefFreeCellMixArrayDevianceBoot

Vector of bootstrapped deviances corresponding to an array of reference-free cell-mixture decompositions

● Data Source: CranContrib
● Keywords:
● Alias: RefFreeCellMixArrayDevianceBoot
● 0 images

print.RefFreeCellMix (Package: RefFreeEWAS) : print.RefFreeCellMix

Print method for objects of type RefFreeCellMix

● Data Source: CranContrib
● Keywords:
● Alias: print.RefFreeCellMix
● 0 images

RefFreeCellMixArrayDevianceBoots (Package: RefFreeEWAS) : RefFreeCellMixArrayDevianceBoots

Matrix of bootstrapped deviances corresponding to an array of reference-free cell-mixture decompositions

● Data Source: CranContrib
● Keywords:
● Alias: RefFreeCellMixArrayDevianceBoots
● 0 images

projectMix (Package: RefFreeEWAS) : Cell Mixture Projection (reference-based)

Constrained linear projection for estimating cell mixture or related coefficients.

● Data Source: CranContrib
● Keywords:
● Alias: projectMix
● 0 images

RefFreeCellMixArray (Package: RefFreeEWAS) : Initialize Reference-Free Cell Mixture Projection

Array of reference-free cell-mixture decompositions of a DNA methylation data set

● Data Source: CranContrib
● Keywords:
● Alias: RefFreeCellMixArray
● 0 images