R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
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Classification

Results 1 - 9 of 9 found.
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RolexaRun-class (Package: Rolexa) : Rolexa Setup Class

A class holding parameters for subsequent run of Rolexa algorithms

● Data Source: BioConductor
● Keywords: attribute, internal
● Alias: GetModel, RolexaRun, RolexaRun-class, SetModel
● 0 images

ForkBatch (Package: Rolexa) : Multi-threaded Probabilistic Base Calling

Performs multi-threaded base calling on a collection of intensity files generated by the Solexa image analysis software

● Data Source: BioConductor
● Keywords: iteration, utilities
● Alias: ForkBatch, OneBatch, OneBatch,RolexaRun-method
● 0 images

SaveResults (Package: Rolexa) : SaveResults

Read and write data in a convenient form for Rolexa base-calling

● Data Source: BioConductor
● Keywords: IO, datagen
● Alias: CombineFastQ, CombineFastQ,RolexaRun,SolexaPath-method, CombineReads, CombineReads,RolexaRun,SolexaPath-method, SaveResults, SaveResults,RolexaRun-method
● 0 images

DeCorrelateChannels (Package: Rolexa) : Correct for global correlations and biases

Functions to correct for global correlations between color channels or between successive sequencing cycles

● Data Source: BioConductor
● Keywords: loess, multivariate, regression
● Alias: DeCorrelateChannels, DeCorrelateChannels,SolexaIntensity-method, DeCorrelateChannels,array-method, DeCorrelateCycles, DeCorrelateCycles,SolexaIntensity-method, DeCorrelateCycles,array-method, OptimizeAngle, OptimizeAngle,SolexaIntensity-method, OptimizeRate, OptimizeRate,SolexaIntensity-method, TileNormalize, TileNormalize,RolexaRun-method
● 0 images

FilterResults (Package: Rolexa) : FilterResults

Filter basecalling results to keep only high-quality bases

● Data Source: BioConductor
● Keywords: manip
● Alias: FilterResults, FilterResults,RolexaRun-method
● 0 images

SeqScore (Package: Rolexa) : Fit and Plot intensities

Model-based classification of intensity data points, to either perform a base calling or generate diagnostic plots

● Data Source: BioConductor
● Keywords: cluster, multivariate
● Alias: SeqScore, SeqScore,RolexaRun-method
● 0 images

BatchAnalysis (Package: Rolexa) : Batch Analysis

Generate summary plots of the results of a base calling batch

● Data Source: BioConductor
● Keywords: dplot, manip, utilities
● Alias: BatchAnalysis, BatchAnalysis,RolexaRun-method, PlotCycles, PlotCycles,RolexaRun-method, QualityBoxPlots
● 0 images

CombinedPlot (Package: Rolexa) : Diagnostic plots

Generate plots to visualy assess the quality of select colonies or sequencing cycles

● Data Source: BioConductor
● Keywords: dplot, manip, utilities
● Alias: ChannelHistogram, ChannelHistogram,SolexaIntensity-method, CombinedPlot, CombinedPlot,RolexaRun-method
● 0 images

TileImage (Package: Rolexa) : Reconstruct tile image

Generate an image of the local intensity average

● Data Source: BioConductor
● Keywords: hplot, loess
● Alias: TileImage, TileImage,SolexaIntensity-method
● 0 images