g2
(Package: SDDE) :
generic name for network Y
This is the generic name for the augmented network Y currently in use by the functions of this package.
● Data Source:
CranContrib
● Keywords:
● Alias: g2
●
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Sample_1
(Package: SDDE) :
An original network X with 11 nodes and an augmented network Y of 14 nodes
This file contains two artificial networks used to illustrate the application of the SDDE package.
● Data Source:
CranContrib
● Keywords: dataset
● Alias: Sample_1
●
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load_network
(Package: SDDE) :
is a helper function to load networks from files
This function allows the user to load the network files. Note that standard igraph functions can be also used.
● Data Source:
CranContrib
● Keywords:
● Alias: load_network
●
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SDDE.version
(Package: SDDE) :
Version information.
This function return the current SDDE version.
● Data Source:
CranContrib
● Keywords:
● Alias: SDDE.version
●
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info_node
(Package: SDDE) :
returns additional information regarding the nodes of networks X and Y (original and augmented)
This function returns some additional information regarding the nodes of networks X and Y such as the reachability of nodes in networks X to the augmented nodes of network Y.
● Data Source:
CranContrib
● Keywords:
● Alias: info_node
●
0 images
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plot_network
(Package: SDDE) :
Helper function to display an illustration of a network.
This function display a representation of the networks.
● Data Source:
CranContrib
● Keywords:
● Alias: plot_network
●
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info_network
(Package: SDDE) :
returns additional information regarding the networks X and Y (original and augmented).
This function returns some additional information such as number of nodes and edges in the networks X and Y.
● Data Source:
CranContrib
● Keywords:
● Alias: info_network
●
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Plasmids
(Package: SDDE) :
An original and an augmented real genomic networks
These networks include 152 archaea, 217 eubacteria with the addition of 3 479 plasmids to illustrate the application of the SDDE package
● Data Source:
CranContrib
● Keywords: dataset
● Alias: Plasmids
●
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sample_path
(Package: SDDE) :
is a helper function that creates a vector of non-repeating pathways to investigate
This internal function create a randomized vector of paired node numbers of a given length without repeat.
● Data Source:
CranContrib
● Keywords:
● Alias: sample_path
●
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complete_restart
(Package: SDDE) :
compares two given networks (original and augmented, presented as undirected graphs) using a path analysis
This function is equivalent to the complete_network function, but it uses a fixed number of pathways to be investigated, which are divided in groups to allow restarting or better dispatching of tasks in a cluster environment.
● Data Source:
CranContrib
● Keywords:
● Alias: complete_restart
●
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