Reads in a (tab-delimited) file containing the true annotations for a set of sequences, a (tab-delimited) file containing the predicted annotations and corresponding scores for the same sequences. Calculates and outputs the average remaining uncertainty, misinformation, and semantic similarity at a series of user-specified thresholds.
Calculates information accretion for each term in the specified ontology using either user -specified data or the sequence annotations for the organisms specified (note that organism-specific pacakges must be downloaded separately. See "note" section).
Reads in a file containing the true terms annotating a set of sequences and a file containing the predicted terms and scores for a set of sequences and outputs a data frame containing the remaining uncertainty and misinformation values for the predictions made for each sequence.
providing 
.