Calculate NB-statistics quantifying differential expression between two groups of samples compared. The results will be used for GSEA run. Comparing with DENBTest, this function will not calculate NB test p-values.
● Data Source:
BioConductor
● Keywords:
● Alias: DENBStat4GSEA
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Calculate NB-statistics quantifying differential expression for each gene in the permutation data sets. The results will be used for GSEA run.
● Data Source:
BioConductor
● Keywords:
● Alias: DENBStatPermut4GSEA
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Perform negative binomial exact test for differential expression - a modified version of nbinomTest in DESeq package.
● Data Source:
BioConductor
● Keywords:
● Alias: DENBTest
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Calculate permutation p-values in differential expression analysis for each genes.
● Data Source:
BioConductor
● Keywords:
● Alias: DEpermutePval
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This function is to calculate NB-statistics quantifying differential splicing for each gene on each permutation data set. The results will be used for GSEA run as DS background.
● Data Source:
BioConductor
● Keywords:
● Alias: DSpermute4GSEA
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Calculate permutation p-values in differential splicing analysis.
● Data Source:
BioConductor
● Keywords:
● Alias: DSpermutePval
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Form a table for differential splicing analysis results at the Exon level.
● Data Source:
BioConductor
● Keywords:
● Alias: DSresultExonTable
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Form a table for differential splicing analysis results at the gene level.
● Data Source:
BioConductor
● Keywords:
● Alias: DSresultGeneTable
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Form a table for GSEA results.
● Data Source:
BioConductor
● Keywords:
● Alias: GSEAresultTable
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The main function of gene set enrichment analysis
● Data Source:
BioConductor
● Keywords:
● Alias: GSEnrichAnalyze
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providing 
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