verboseScatterplot
(Package: WGCNA) :
Scatterplot annotated by regression line and p-value
Produce a scatterplot annotated by the correlation, p-value, and regression line.
● Data Source:
CranContrib
● Keywords: hplot
● Alias: verboseScatterplot
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colQuantileC
(Package: WGCNA) :
Fast colunm- and row-wise quantile of a matrix.
Fast calculation of column- and row-wise quantiles of a matrix at a single probability. Implemented via compiled code, it is much faster than the equivalent apply(data, 2, quantile, prob = p).
● Data Source:
CranContrib
● Keywords: misc
● Alias: colQuantileC, rowQuantileC
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numbers2colors
(Package: WGCNA) :
Color representation for a numeric variable
The function creates a color represenation for the given numeric input.
● Data Source:
CranContrib
● Keywords: misc
● Alias: numbers2colors
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This function calculates permutation Z statistics that measure how different the co-clustering of modules in a reference and test clusterings is from random.
● Data Source:
CranContrib
● Keywords: misc
● Alias: coClustering.permutationTest
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This function creates a multiData structure by storing its input arguments as the 'data' components.
● Data Source:
CranContrib
● Keywords: misc
● Alias: multiData
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labels2colors
(Package: WGCNA) :
Convert numerical labels to colors.
Converts a vector or array of numerical labels into a corresponding vector or array of colors corresponding to the labels.
● Data Source:
CranContrib
● Keywords: color
● Alias: labels2colors
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nearestNeighborConnectivityMS
(Package: WGCNA) :
Connectivity to a constant number of nearest neighbors across multiple data sets
Given expression data from several sets and basic network parameters, the function calculates connectivity of each gene to a given number of nearest neighbors in each set.
● Data Source:
CranContrib
● Keywords: misc
● Alias: nearestNeighborConnectivityMS
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consensusMEDissimilarity
(Package: WGCNA) :
Consensus dissimilarity of module eigengenes.
Calculates consensus dissimilarity (1-cor) of given module eigengenes relaized in several sets.
● Data Source:
CranContrib
● Keywords: misc
● Alias: consensusMEDissimilarity
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nSets
(Package: WGCNA) :
Number of sets in a multi-set variable
A convenience function that returns the number of sets in a multi-set variable.
● Data Source:
CranContrib
● Keywords: misc
● Alias: nSets
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matchLabels
(Package: WGCNA) :
Relabel module labels to best match the given reference labels
Given a source and reference vectors of module labels, the function produces a module labeling that is equivalent to source, but individual modules are re-labeled so that modules with significant overlap in source and reference have the same labels.
● Data Source:
CranContrib
● Keywords: misc
● Alias: matchLabels
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