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This part describes non-obvious terms used in this package.
● Data Source:
BioConductor
● Keywords: documentation
● Alias: 1. Dictionary
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(Package: affxparser) :
2. Cell coordinates and cell indices
This part describes how Affymetrix cells, also known as probes or features, are addressed.
● Data Source:
BioConductor
● Keywords: documentation
● Alias: 2. Cell coordinates and cell indices
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(Package: affxparser) :
9. Advanced - Cell-index maps for reading and writing
This part defines read and write maps that can be used to remap cell indices before reading and writing data from and to file, respectively.
● Data Source:
BioConductor
● Keywords: documentation, internal
● Alias: 9. Advanced - Cell-index maps for reading and writing
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The affxparser package provides methods for fast and memory efficient parsing of Affymetrix files [1] using the Affymetrix' Fusion SDK [2]. Both traditional ASCII- and binary (XDA)-based files are supported, as well as Affymetrix future binary format "Calvin". The efficiency of the parsing is dependent on whether a specific file is binary or ASCII.
● Data Source:
BioConductor
● Keywords: package
● Alias: affxparser, affxparser-package
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applyCdfGroupFields
(Package: affxparser) :
Applies a function to a list of fields of each group in a CDF structure
Applies a function to a list of fields of each group in a CDF structure.
● Data Source:
BioConductor
● Keywords: programming
● Alias: applyCdfGroupFields
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applyCdfGroups
(Package: affxparser) :
Applies a function over the groups in a CDF structure
Applies a function over the groups in a CDF structure.
● Data Source:
BioConductor
● Keywords: programming
● Alias: applyCdfGroups
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arrangeCelFilesByChipType
(Package: affxparser) :
Moves CEL files to subdirectories with names corresponding to the chip types
Moves CEL files to subdirectories with names corresponding to the chip types according to the CEL file headers. For instance, a HG_U95Av2 CEL file with pathname "data/foo.CEL" will be moved to subdirectory celFiles/HG_U95Av2/.
● Data Source:
BioConductor
● Keywords: internal, programming
● Alias: arrangeCelFilesByChipType
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cdfAddBaseMmCounts
(Package: affxparser) :
Adds the number of allele A and allele B mismatching nucleotides of the probes in a CDF structure
Adds the number of allele A and allele B mismatching nucleotides of the probes in a CDF structure.
● Data Source:
BioConductor
● Keywords: internal, programming
● Alias: cdfAddBaseMmCounts
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cdfAddPlasqTypes
(Package: affxparser) :
Adds the PLASQ types for the probes in a CDF structure
Adds the PLASQ types for the probes in a CDF structure.
● Data Source:
BioConductor
● Keywords: internal, programming
● Alias: cdfAddPlasqTypes
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cdfAddProbeOffsets
(Package: affxparser) :
Adds probe offsets to the groups in a CDF structure
Adds probe offsets to the groups in a CDF structure.
● Data Source:
BioConductor
● Keywords: internal, programming
● Alias: cdfAddProbeOffsets
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providing 
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