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This is a class representation for Probe level Linear Models fitted to Affymetrix GeneChip probe level data.
● Data Source:
BioConductor
● Keywords: classes
● Alias: Mbox, Mbox,PLMset-method, PLMset, PLMset-class, RLE, RLE,PLMset-method, annotation,PLMset-method, boxplot,PLMset-method, cdfName,PLMset-method, coefs, coefs,PLMset-method, coefs.const, coefs.const,PLMset-method, coefs.probe, coefs.probe,PLMset-method, coefs<-, coefs<-,PLMset-method, description,PLMset-method, getCdfInfo,PLMset-method, image,PLMset-method, indexProbes,PLMset,character-method, indexProbesProcessed, indexProbesProcessed,PLMset-method, model.description, model.description,PLMset-method, normvec, normvec,PLMset-method, nuse, nuse,PLMset-method, pData,PLMset-method, pData<-,PLMset,data.frame-method, phenoData,PLMset-method, phenoData<-,PLMset,AnnotatedDataFrame-method, resid, resid,PLMset-method, resid<-, resid<-,PLMset-method, residSE, residSE,PLMset-method, residuals, residuals,PLMset-method, residuals<-, residuals<-,PLMset-method, sampleNames,PLMset-method, sampleNames<-, sampleNames<-,PLMset,character-method, se, se,PLMset-method, se.const, se.const,PLMset-method, se.probe, se.probe,PLMset-method, se<-, se<-,PLMset-method, show,PLMset-method, summary,PLMset-method, varcov, varcov,PLMset-method, weights, weights,PLMset-method, weights<-, weights<-,PLMset-method
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Internal affyPLM functions
● Data Source:
BioConductor
● Keywords: internal
● Alias: PLM.designmatrix, PLM.designmatrix2, PLM.designmatrix3, bg.correct.gcrma, bg.correct.shift, bg.correct.stretch, convert.LESN.param, fitPLM.old, get.background.code, get.default.psi.k, get.normalization.code, get.psi.code, get.summary.code, verify.bg.param, verify.constraint.types, verify.model.param, verify.norm.param, verify.output.param, verify.variable.types
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providing 
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