MAplotPara
(Package: affyPara) :
Parallelized relative M vs. A plots for Microarray Data
Parallelized creation of M vs A plots. Where M is determined relative to a specified chip or to a pseudo-median reference chip. And optimized plots for a large number of microarrays.
● Data Source:
BioConductor
● Keywords: manip, programming
● Alias: MAplotPara, MAplotSer
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bgCorrectPara
(Package: affyPara) :
Parallelized Background Correction
Parallelized functions for background correction of probe intensities.
● Data Source:
BioConductor
● Keywords: manip, programming
● Alias: bgCorrectPara
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boxplotPara
(Package: affyPara) :
Parallelized Box Plots for Microarray Data
Parallelized functions for Box Plots for Microarray Data. And optimized plots for a large number of microarrays.
● Data Source:
BioConductor
● Keywords: manip, programming
● Alias: boxplotPara
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Class extends the class vsnInput . The class contains input data and parameters for parallel vsn functions.
● Data Source:
BioConductor
● Keywords: classes
● Alias: class:vsnInputPara, vsnInputPara, vsnInputPara-class
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computeExprSetPara
(Package: affyPara) :
Parallel generate a set of expression values
Parallel generation of a set of expression values from the probe pair information. The set of expression is returned as an ExpressionSet object.
● Data Source:
BioConductor
● Keywords: manip, programming
● Alias: computeExprSetPara
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This function distributes files from the master node to the disk of the slaves in the computer cluster.
● Data Source:
BioConductor
● Keywords: programming
● Alias: distributeFiles
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Functions to merge or combine a list of split objects (AffyBatch, Matrix).
● Data Source:
BioConductor
● Keywords: programming
● Alias: combineMatrices, mergeAffyBatches
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Parallelized scaling normalization of arrays.
● Data Source:
BioConductor
● Keywords: manip, programming
● Alias: normalizeAffyBatchConstantPara
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Parallelized normalization of arrays using an invariant set.
● Data Source:
BioConductor
● Keywords: manip, programming
● Alias: normalizeAffyBatchInvariantsetPara
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Parallelized loess normalization of arrays.
● Data Source:
BioConductor
● Keywords: manip, programming
● Alias: normalizeAffyBatchLoessPara
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