R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 10 of 29 found.
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extractTupleOfDataFiles.MultiSourceCopyNumberNormalization (Package: aroma.cn) : Gets a list of data files for a particular name across several data sets

Gets a list of data files for a particular name across several data sets.

● Data Source: CranContrib
● Keywords: internal, methods
● Alias: MultiSourceCopyNumberNormalization.extractTupleOfDataFiles, extractTupleOfDataFiles,MultiSourceCopyNumberNormalization-method, extractTupleOfDataFiles.MultiSourceCopyNumberNormalization
● 0 images

getInputDataSets.MultiSourceCopyNumberNormalization (Package: aroma.cn) : Gets the list of data sets to be normalized

Gets the list of data sets to be normalized.

● Data Source: CranContrib
● Keywords: internal, methods
● Alias: MultiSourceCopyNumberNormalization.getInputDataSets, getInputDataSets,MultiSourceCopyNumberNormalization-method, getInputDataSets.MultiSourceCopyNumberNormalization
● 0 images

XYCurveNormalization (Package: aroma.cn) : The XYCurveNormalization class

Package: aroma.cn
Class XYCurveNormalization

● Data Source: CranContrib
● Keywords: classes
● Alias: XYCurveNormalization
● 0 images

PrincipalCurveNormalization (Package: aroma.cn) : The PrincipalCurveNormalization class

Package: aroma.cn
Class PrincipalCurveNormalization

● Data Source: CranContrib
● Keywords: classes
● Alias: PrincipalCurveNormalization
● 0 images

AbstractCurveNormalization (Package: aroma.cn) : The AbstractCurveNormalization class

Package: aroma.cn
Class AbstractCurveNormalization

● Data Source: CranContrib
● Keywords: classes
● Alias: AbstractCurveNormalization
● 0 images

fitOne.MultiSourceCopyNumberNormalization (Package: aroma.cn) : Fits the multi-source model for one sample

Fits the multi-source model for one sample. The model is fitted on the subset of units returned by *getSubsetToFit().

● Data Source: CranContrib
● Keywords: internal, methods
● Alias: MultiSourceCopyNumberNormalization.fitOne, fitOne,MultiSourceCopyNumberNormalization-method, fitOne.MultiSourceCopyNumberNormalization
● 0 images

aroma.cn-package (Package: aroma.cn) : Package aroma.cn

Methods for analyzing DNA copy-number data. Specifically, this package implements the multi-source copy-number normalization (MSCN) method for normalizing copy-number data obtained on various platforms and technologies. It also implements the TumorBoost method for normalizing paired tumor-normal SNP data.

● Data Source: CranContrib
● Keywords: package
● Alias: aroma.cn, aroma.cn-package
● 0 images

getSubsetToFit.MultiSourceCopyNumberNormalization (Package: aroma.cn) : Gets subset of (smoothing) units for fitting the model

Gets subset of (smoothing) units for fitting the model.

● Data Source: CranContrib
● Keywords: internal, methods
● Alias: MultiSourceCopyNumberNormalization.getSubsetToFit, getSubsetToFit,MultiSourceCopyNumberNormalization-method, getSubsetToFit.MultiSourceCopyNumberNormalization
● 0 images

normalizePrincipalCurve.matrix (Package: aroma.cn) : Normalizes data in K dimensions using principal curves

Normalizes data in K dimensions using principal curves such that afterward the data cluster (approximately linearly) along the diagonal (in K dimensions).

● Data Source: CranContrib
● Keywords: internal, methods
● Alias: normalizePrincipalCurve.matrix
● 0 images

cnr (Package: aroma.cn) : Simple creation of a CopyNumberRegions object

Simple creation of a CopyNumberRegions object containing a single region.

● Data Source: CranContrib
● Keywords: internal
● Alias: cnr
● 0 images