transcriptIDs
(Package: ballgown) :
get numeric transcript IDs from a ballgown object
get numeric transcript IDs from a ballgown object
● Data Source:
BioConductor
● Keywords:
● Alias: transcriptIDs, transcriptIDs,ballgown-method
●
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transcriptNames
(Package: ballgown) :
get transcript names from a ballgown object
get transcript names from a ballgown object
● Data Source:
BioConductor
● Keywords:
● Alias: transcriptNames, transcriptNames,ballgown-method
●
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writeFiles
(Package: ballgown) :
write files to disk from ballgown object
create tablemaker-like files on disk from a ballgown object
● Data Source:
BioConductor
● Keywords:
● Alias: writeFiles
●
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annotate_assembly
(Package: ballgown) :
match assembled transcripts to annotated transcripts
match assembled transcripts to annotated transcripts
● Data Source:
BioConductor
● Keywords:
● Alias: annotate_assembly
●
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S4 class for storing and manipulating expression data from assembled transcriptomes
● Data Source:
BioConductor
● Keywords:
● Alias: Ballgown, ballgown-class
●
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constructor function for ballgown objects
● Data Source:
BioConductor
● Keywords:
● Alias: ballgown, ballgown-constructor
●
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ballgown-package
(Package: ballgown) :
The ballgown package for analysis of transcript assemblies
The ballgown package for analysis of transcript assemblies
● Data Source:
BioConductor
● Keywords:
● Alias: ballgown-package, ballgownp
●
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ballgownrsem
(Package: ballgown) :
load RSEM data into a ballgown object
Loads results of rsem-calculate-expression into a ballgown object for easy visualization, processing, and statistical testing
● Data Source:
BioConductor
● Keywords:
● Alias: ballgownrsem
●
0 images
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bg
(Package: ballgown) :
Toy ballgown object
Small ballgown object created with simulated toy data, for demonstration purposes
● Data Source:
BioConductor
● Keywords:
● Alias: bg
●
0 images
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checkAssembledTx
(Package: ballgown) :
plot annotated and assembled transcripts together
plot annotated and assembled transcripts together
● Data Source:
BioConductor
● Keywords:
● Alias: checkAssembledTx
●
1 images
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