Last data update: 2014.03.03

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Results 1 - 10 of 32 found.
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Biclust-class (Package: biclust) : The Biclust Class

Biclust is the class structure for results of a bicluster algorithm. It contains all information needed for further processing. The show Method gives the Name of the Algorithm used and the first Bicluster found. The summary Method gives sizes of all bicluster found.
● Data Source: CranContrib
● Keywords: classes
● Alias: Biclust, Biclust-class, BiclustResult, show,Biclust-method, summary,Biclust-method
● 0 images

jaccardind (Package: biclust) : Jaccardind

An adaption of the Jaccard Index for clustering is calculated.
● Data Source: CranContrib
● Keywords: cluster
● Alias: jaccard2, jaccardind
● 0 images

drawHeatmap (Package: biclust) : Draw Heatmap

Draws a microarray data matrix as a heatmap, with rows and colums reordered so the rows and columns of the input bicluster will be at top-left of the matrix.
● Data Source: CranContrib
● Keywords: cluster, hplot
● Alias: drawHeatmap, drawHeatmap2, heatmap
● 0 images

BCCC (Package: biclust) : The CC Bicluster algorithm

Performs CC Biclustering based on the framework by Cheng and Church (2000). Searches for submatrices with a score lower than a specific treshold in a standardized data matrix.
● Data Source: CranContrib
● Keywords: classif, cluster
● Alias: BCCC, BCCC-class, CC, biclust,matrix,BCCC-method
● 0 images

bimax.grid (Package: biclust) :

Generates a list containing parameter settings for the ensemble algorithm.
● Data Source: CranContrib
● Keywords: cluster
● Alias: bimax.grid
● 0 images

biclust (Package: biclust) : The biclust Method

The function biclust is the main function of the package. It calculates the bicluster in a data matrix using the algorithm specified in the method-argument. Currently the package contains 5 different methods for the use in biclust. For each algorithm see the class help files for further details. For some algorithms preproccessing is necessary, e.g. BCBimax only runs with a logical matrix.
● Data Source: CranContrib
● Keywords: cluster
● Alias: biclust, biclust,matrix,BiclustMethod-method, biclust,matrix,character-method, biclust,matrix,function-method, biclust-method
● 0 images

diagnoseColRow (Package: biclust) :

Calculate the signifiance of the discovered patter in the data based on the bootstrapping procedure.
● Data Source: CranContrib
● Keywords: bicluster, bootstrap
● Alias: diagnoseColRow
● 0 images

biclustmember (Package: biclust) : Bicluster Membership Graph

Draws a membership graph cluster x columns
● Data Source: CranContrib
● Keywords: cluster, hplot
● Alias: biclustmember, bicorder, clustmember
● 0 images

bicluster (Package: biclust) : Extract Bilcuster

Function to extract the bicluster or the row and column numbers from a given bicluster result
● Data Source: CranContrib
● Keywords: cluster
● Alias: bicluster, biclusternumber
● 0 images

writeclust (Package: biclust) : Write a Bicluster as a Cluster Result

Draws a graph to compare the values inside the diffrent biclusters with the values outside the bicluster
● Data Source: CranContrib
● Keywords: cluster, hplot
● Alias: writeclust
● 0 images