GCcontent
(Package: biovizBase) :
GC content computation for BSgenome
Compute GC content in a certain region of a BSgenome object
● Data Source:
BioConductor
● Keywords:
● Alias: GCcontent
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addStepping-method
(Package: biovizBase) :
Adding disjoint levels to a GenomicRanges object
Adding disjoint levels to a GenomicRanges object
● Data Source:
BioConductor
● Keywords:
● Alias: addStepping, addStepping,GenomicRanges-method
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parseArgsForAes
(Package: biovizBase) :
Utils for parsing (un)evaluated arguments
Utilities for parsing (un)evaluated arguments
● Data Source:
BioConductor
● Keywords:
● Alias: parseArgsForAes, parseArgsForNonAes
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biovizBase-package
(Package: biovizBase) :
biovizBase is a package which provides utilities and color scheme...
biovizBase is a package which provides utilities and color scheme for higher level graphic package which aim to visualize biological data especially genetic data.
● Data Source:
BioConductor
● Keywords:
● Alias: biovizBase-package
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This function help users create a function based on specified color blind safe palette. And the returned function could be used for color generation.
● Data Source:
BioConductor
● Keywords:
● Alias: blind.pal.info, brewer.pal.blind.info, colorBlindSafePal, dichromat.pal.blind.info, genBlindPalInfo, genBrewerBlindPalInfo, genDichromatPalInfo
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containLetters
(Package: biovizBase) :
Checking if string contains letters or not
Test if a string contain any letters
● Data Source:
BioConductor
● Keywords:
● Alias: containLetters
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crunch
(Package: biovizBase) :
Fetching GRanges from various data source
Fetching Granges from various data source, currently supported objects are TxDb, EnsDb, GAlignments and BamFile.
● Data Source:
BioConductor
● Keywords:
● Alias: crunch, crunch,BamFile-method, crunch,EnsDb-method, crunch,GAlignments-method, crunch,TxDb-method
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Estimation of Coverage
● Data Source:
BioConductor
● Keywords:
● Alias: estimateCoverage, estimateCoverage,BamFile-method
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flatGrl
(Package: biovizBase) :
Transform GRangesList to GRanges
Transform GRangesList to GRanges.
● Data Source:
BioConductor
● Keywords:
● Alias: flatGrl
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getBioColor
(Package: biovizBase) :
Color scheme getter for biological data
This function tries to get default color scheme either from fixed palette or options for specified data set, usually just biological data.
● Data Source:
BioConductor
● Keywords:
● Alias: getBioColor
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providing 
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