Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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alleleEnrichment (Package: boostSeq) : Select a Subsample with Optimized Allele Frequencies from Genotyped Individuals

The function selects a user-defined number of samples from a larger cohort so that predefined alleles are guaranteed to be contained at a maximum frequency. It is also possible to require a balanced selection, matching the frequencies in the full cohort. Takes an arbitrary number of independent SNPs for which alleles are to be maximized, and can optionally also enrich phenotypes (have to be linearly scaled integer values).
● Data Source: CranContrib
● Keywords:
● Alias: alleleEnrichment
● 0 images

getSnpWeights (Package: boostSeq) : Extract p-value weights from a GWAS resultfile

This is a very simple function that extracts for a number of SNPs their p-value from an association result file, e.g. generated by PLINK.
● Data Source: CranContrib
● Keywords:
● Alias: getSnpWeights
● 0 images