callSummarize
(Package: cn.farms) :
Defines which variables should be written back when calling a cn.farms run
Defines which variables should be written back when calling a cn.farms run
● Data Source:
BioConductor
● Keywords:
● Alias: callSummarize
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Wrapper for the cn.farms algorithm
● Data Source:
BioConductor
● Keywords:
● Alias: cn.farms
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cnLibrary
(Package: cn.farms) :
This function was taken from snowfall and edited due to some deprecated function calls.
This function was taken from snowfall and edited due to some deprecated function calls.
● Data Source:
BioConductor
● Keywords:
● Alias: cnLibrary
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combineData
(Package: cn.farms) :
Combine two ExpressionSet objects
Suitable for SNP or non-polymorphic data which were already processed with single locus FARMS
● Data Source:
BioConductor
● Keywords:
● Alias: combineData
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Annotation files for cn.farms are created
● Data Source:
BioConductor
● Keywords:
● Alias: createAnnotation
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Creates the needed matrix
● Data Source:
BioConductor
● Keywords:
● Alias: createMatrix
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Be aware that this function is implemented quite slow.
● Data Source:
BioConductor
● Keywords:
● Alias: distributionDistance
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dnaCopySf
(Package: cn.farms) :
Runs DNAcopy in parallel mode
This function even works very well with ff matrices,
● Data Source:
BioConductor
● Keywords:
● Alias: dnaCopySf
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doCnFarmsSingle
(Package: cn.farms) :
Does the whole cn.farms process in one call
Works for all kind of Affymetrix SNP arrays
● Data Source:
BioConductor
● Keywords:
● Alias: doCnFarmsSingle
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flcSnp6Std
(Package: cn.farms) :
Does a fragment length correction on intensities
Does a fragment length correction on intensities
● Data Source:
BioConductor
● Keywords:
● Alias: flcSnp6Std
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providing 
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