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Artificial SNP array data containing a logR track and a BAF track
● Data Source:
BioConductor
● Keywords:
● Alias: BAF, logR
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0 images
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aspcf
(Package: copynumber) :
Allele-specific copy number segmentation.
Joint segmentation of SNP array data resulting in piecewise constant curves with common break points for copy number data and B-allelle frequency data.
● Data Source:
BioConductor
● Keywords:
● Alias: aspcf
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0 images
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Segments, obtained by pcf or multipcf, are classified as "gain", "normal" or "loss" given the specified thresholds.
● Data Source:
BioConductor
● Keywords:
● Alias: callAberrations
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0 images
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The segments data frame obtained e.g. by pcf, multipcf or aspcf is converted to the GRanges format.
● Data Source:
BioConductor
● Keywords:
● Alias: getGRangesFormat
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0 images
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imputeMissing
(Package: copynumber) :
Impute missing copy number values
Missing copy number values are imputed by a constant value or pcf-estimates.
● Data Source:
BioConductor
● Keywords:
● Alias: imputeMissing
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0 images
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Given a segmentation by pcf, interpolate pcf-estimates for specific positions.
● Data Source:
BioConductor
● Keywords:
● Alias: interpolate.pcf
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0 images
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A subset of the aCGH data set taken from the reference below.
● Data Source:
BioConductor
● Keywords:
● Alias: lymphoma
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0 images
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A subset of the 244K MicMa data set containing copy number measurements for six samples on chromosome 17.
● Data Source:
BioConductor
● Keywords:
● Alias: micma
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0 images
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multipcf
(Package: copynumber) :
Multi-sample copy number segmentation.
Joint segmentation resulting in piecewise constant curves with common break points for all samples.
● Data Source:
BioConductor
● Keywords:
● Alias: multipcf
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0 images
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pcf
(Package: copynumber) :
Single-sample copy number segmentation.
Fit a individual piecewise constant segmentation curve to each sample's copy number data.
● Data Source:
BioConductor
● Keywords:
● Alias: pcf
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0 images
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providing 
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