R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

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Functions
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Data set

Classification

Results 1 - 10 of 26 found.
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nFit (Package: crmn) : Normalization model

Common class representation for normalization models.

● Data Source: CranContrib
● Keywords:
● Alias: nFit, nFit-class
● 0 images

mexprs-rep-methods (Package: crmn) : Accessor

Matrix safe setter of expression slot

● Data Source: CranContrib
● Keywords:
● Alias: mexprs-rep-methods, mexprs<-, mexprs<-,ExpressionSet,matrix-method, mexprs<-,matrix,matrix-method
● 0 images

mix (Package: crmn) : Dilution mixture dataset.

Mixture dilution series

● Data Source: CranContrib
● Keywords:
● Alias: mix
● 0 images

analytes_eset (Package: crmn) : Accessor for the analytes

Subset an expression set to remove the internal standards

● Data Source: CranContrib
● Keywords:
● Alias: analytes,ExpressionSet,missing-method, analytes_eset
● 0 images

show (Package: crmn) : Show method for nFit

Show some basic information for an nFit model

● Data Source: CranContrib
● Keywords:
● Alias: show, show,nFit-method
● 0 images

standardsPred (Package: crmn) : Predict effect for new data (or get fitted data)

Predicted values for the standards

● Data Source: CranContrib
● Keywords:
● Alias: standardsPred
● 0 images

makeX-methods (Package: crmn) : Make X

Construct a design matrix

● Data Source: CranContrib
● Keywords:
● Alias: makeX, makeX,ANY,matrix-method, makeX,ExpressionSet,character-method, makeX-methods
● 0 images

pcaMuffle (Package: crmn) : Muffle the pca function

PCA and Q2 issues warnings about biasedness and poorly estimated PCs. The first is non-informative and the poorly estimated PCs will show up as poor overfitting which leads to a choice of fewer PCs i.e. not a problem. This function is mean to muffle those warnings. Only used for version of pcaMethods before 1.26.0.

● Data Source: CranContrib
● Keywords:
● Alias: pcaMuffle
● 0 images

analytes (Package: crmn) : Accessor for the analytes

Subset an data set to only contain the analytes.

● Data Source: CranContrib
● Keywords:
● Alias: analytes
● 0 images

model-methods (Package: crmn) : Accessor for the model

Get the model

● Data Source: CranContrib
● Keywords:
● Alias: model, model,nFit-method, model-methods
● 0 images