SEmethods
(Package: csaw) :
Statistical wrappers for SummarizedExperiment objects
Convenience wrappers for statistical routines operating on SummarizedExperiment objects.
● Data Source:
BioConductor
● Keywords: normalization
● Alias: asDGEList, asDGEList,SummarizedExperiment-method, normOffsets,SummarizedExperiment-method, normalize, normalize,SummarizedExperiment-method
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checkBimodality
(Package: csaw) :
Check bimodality of regions
Compute the maximum bimodality score across all base pairs in each region.
● Data Source:
BioConductor
● Keywords: diagnostics
● Alias: checkBimodality
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clusterFDR
(Package: csaw) :
Compute the cluster-level FDR
Compute the FDR across clusters based on the test-level FDR threshold
● Data Source:
BioConductor
● Keywords: testing
● Alias: clusterFDR, controlClusterFDR
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clusterWindows
(Package: csaw) :
Cluster DB windows into clusters
Clusters significant windows into clusters while controlling the cluster-level FDR.
● Data Source:
BioConductor
● Keywords: clustering
● Alias: clusterWindows
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combineTests
(Package: csaw) :
Combine statistics across multiple tests
Combines p-values across clustered tests using Simes' method to control the cluster FDR.
● Data Source:
BioConductor
● Keywords: testing
● Alias: combineTests
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Consolidate DB results from multiple analyses with cluster-level FDR control.
● Data Source:
BioConductor
● Keywords: clustering
● Alias: consolidateClusters
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Consolidate DB results from multiple window sizes.
● Data Source:
BioConductor
● Keywords: clustering
● Alias: consolidateSizes
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correlateReads
(Package: csaw) :
Compute correlation coefficients between reads
Computes the auto- or cross-correlation coefficients between read positions across a set of delay intervals.
● Data Source:
BioConductor
● Keywords: diagnostics
● Alias: correlateReads
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csawUsersGuide
(Package: csaw) :
View csaw user's guide
Finds the location of the user's guide and opens it for viewing.
● Data Source:
BioConductor
● Keywords: documentation
● Alias: csaw, csawUsersGuide
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detailRanges
(Package: csaw) :
Add annotation to ranges
Add detailed exon-based annotation to specified genomic regions.
● Data Source:
BioConductor
● Keywords: annotation
● Alias: detailRanges
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