This class contains the result of an RNA-Seq data analysis. The class contains the transcript names together with the parameters per condition, i.e., overdispersion and mean. Further it contains informative/non-informative values or p-values.
`[`
(Package: dexus) :
Subsetting a "DEXUSResult".
Information about specific transcripts can be accessed in the "DEXUSResult" object by using the standard brackets "[idx]" for subsetting. Either transcript names or transcript indices can be used.
This generic function sets the threshold of the I/NI value. Transcripts with I/NI values above the I/NI threshold are considered as differentially expressed. The results of DEXUS are stored as an instance of DEXUSResult-class.
accessors
(Package: dexus) :
Accessors for a "DEXUSResult".
These generic functions return the slots of an RNA-Seq analysis performed by DEXUS. The results of DEXUS are stored as an instance of DEXUSResult-class.
dexss
(Package: dexus) :
Detection of Differential Expression in a semi-supervised Setting
Performs the DEXSS algorithm for detection of differentially expressed genes in RNA-seq data for a semi-supervised setting, i.e. that the condition of some samples is known, and for some samples the condition is unkown.
dexus
(Package: dexus) :
Detection of Differential Expression in an Unsupervised Setting
Performs the DEXUS algorithm for detection of differentially expressed genes in RNA-seq data for a) unknown conditions, b) multiple known conditions, and c) two known conditions.
Normalizes RNA-seq count data using previously published approaches. Each samples' read counts are corrected by a normalizing factor. The options are "RLE" by (Anders and Huber, 2010), and "upperquartile" by (Bullard et al., 2010).
providing 
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