Construct an object of class dmm containing all attributes needed to run the gresponse() function. The user must supply a phenotypic covariance matrix, and a genetic covariance matrix for each of the components needed by gresponse()
● Data Source:
CranContrib
● Keywords: manip
● Alias: make.dmmobj
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Converts the identifiers in column Id of a dataframe into numeric codes which form a sequence from 1 to n with unit increments and no duplicates. Converts the identifiers in columns SId and DId to correspond.
● Data Source:
CranContrib
● Keywords: manip
● Alias: pedrenum
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Convert a vector (such as a dataframe column) from factor to numeric. Non-numeric values will coerce to NA.
● Data Source:
CranContrib
● Keywords: Methods, Misc
● Alias: unfactor
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Internal function used by dmm() to construct vectors containing various subsets of the available variance component names, for use in testing and flow control. Made available at user level because it may be useful in constructing the components argument of dmm() .
● Data Source:
CranContrib
● Keywords: misc
● Alias: make.ctable
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Summarizes path specific, sex specific, and overall responses in a gresponse.dmm object, adding appropriate headings.
● Data Source:
CranContrib
● Keywords: methods
● Alias: summary.gresponse.dmm
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Prints overall responses only.
● Data Source:
CranContrib
● Keywords: methods
● Alias: print.gresponse.dmm
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Extracts the genetic parameters from an object of class dmm , for the specified set of traits and set of components. Makes tables of parameters ordered either by trait or by component. Tables include parameter estimate, its standard error, and its 95 percent confidence limits.
● Data Source:
CranContrib
● Keywords: methods
● Alias: gsummary, gsummary.dmm
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Provide a short description of the model fitted and the genetic parameters obtained for an object of class dmm .
● Data Source:
CranContrib
● Keywords: methods
● Alias: gprint
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Extracts the (co)variance component eatimates from an object of class dmm , for the specified set of traits and set of components. Makes tables of component estimates ordered either by trait or by component. Tables include component estimate, its standard error, and its 95 percent confidence limits.
● Data Source:
CranContrib
● Keywords: methods
● Alias: summary.dmm
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Formats each attribute of a gsummary.dmm object for printing, adding appropriate headings.
● Data Source:
CranContrib
● Keywords: methods
● Alias: print.gsummary.dmm
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