R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 12 found.
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BinnedFlowSample (Package: flowBin) : A code{FlowSample

clust.labels:: list of cluster label vectors, one for each tube
● Data Source: BioConductor
● Keywords:
● Alias: BinnedFlowSample, BinnedFlowSample-class, bin.labels, bin.labels,BinnedFlowSample-method, bin.labels<-, bin.labels<-,BinnedFlowSample,list-method
● 0 images

FlowSample (Package: flowBin) : A class similar to flowSet, but with extra information needed by flowBin

name:: character string - name of the object
● Data Source: BioConductor
● Keywords:
● Alias: FlowSample, FlowSample-class, bin.pars, bin.pars,FlowSample-method, bin.pars<-, bin.pars<-,FlowSample,vector-method, control.tubes, control.tubes,FlowSample-method, control.tubes<-, control.tubes<-,FlowSample,vector-method, measure.pars, measure.pars,FlowSample-method, measure.pars<-, measure.pars<-,FlowSample,list-method, name, name,FlowSample-method, name<-, name<-,FlowSample,character-method, show,FlowSample-method, tube.set, tube.set,FlowSample-method, tube.set<-, tube.set<-,FlowSample,list-method
● 0 images

checkQNorm (Package: flowBin) : Function to check the quantile normalisation of a FlowSample using flowFP

Function to check the quantile normalisation of a FlowSample using flowFP

● Data Source: BioConductor
● Keywords:
● Alias: checkQNorm, checkQNorm,, checkQNorm,FlowSample,FlowSample-method
● 0 images

eventsInBins (Package: flowBin) : Count number of events for each tube in each bin

Useful for QA of bin mapping

● Data Source: BioConductor
● Keywords:
● Alias: eventsInBins, eventsInBins,BinnedFlowSample-method
● 0 images

flowBin (Package: flowBin) : function to run the entire flowBin pipeline

Takes a list of flowFrames representing tubes from a single flow cytometry sample, and combines them using binning of events in terms of common markers across tubes.

● Data Source: BioConductor
● Keywords:
● Alias: flowBin, flowbin-package
● 1 images

flowFPBin (Package: flowBin) : Bin sample using flowFP binning

Bin sample using flowFP binning

● Data Source: BioConductor
● Keywords:
● Alias: flowFPBin, flowFPBin,FlowSample-method
● 0 images

getBinExpr (Package: flowBin) : Calculate the expression of each bin in a BinnedFlowSample in terms of the measurement markers

getBinExpr main function definition

● Data Source: BioConductor
● Keywords:
● Alias: getBinExpr, getBinExpr,BinnedFlowSample-method
● 1 images

kMeansBin (Package: flowBin) : Bin sample using K-means binning

Bin sample using K-means binning

● Data Source: BioConductor
● Keywords:
● Alias: kMeansBin, kMeansBin,FlowSample-method
● 0 images

mapBinsKNN (Package: flowBin) : Internal function to map bins by KNN

Internal function to map bins by KNN

● Data Source: BioConductor
● Keywords:
● Alias: mapBinsKNN, mapBinsKNN,FlowSample-method
● 0 images

quantileNormalise (Package: flowBin) : quantileNormalise

Since the binning parameters are the same across tubes, and samples each tube is an aliquot from the same sample, these should have the same underlying distribution. Hence, quantile normalisation can be used to force this to be so, removing technical variation.

● Data Source: BioConductor
● Keywords:
● Alias: quantileNormalise, quantileNormalise,FlowSample-method
● 0 images