Last data update: 2014.03.03
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Cran Task View
BiocViews
SMO (statistical methods ontology)
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Images
addName-methods
(Package: flowViz ) :
Add gate names to a flowViz plot.
flowViz plot, either derived from the population identifiers or as provided by the user. These methods are ment for internal use and are usually not called directly by the user.
● Data Source:
BioConductor
Basic contour plots for both flowFrames and flowSets. The densities for the contours are estimated using the fast kernel density estimation algorithm bkde2D.
● Data Source:
BioConductor
● Keywords: methods
● Alias: contour, contour,ANY-method, contour,flowFrame-method, contour,flowSet-method, contour-methods
●
5 images
densityplot
(Package: flowViz ) :
One-dimensional density/histogram plots for flow data
flowSets the idea is to horizontally stack plots of density estimates for all frames in the flowSet for one or several flow parameters. In the latter case, each parameter will be plotted in a separate panel, i.e., we implicitly condition on parameters.
● Data Source:
BioConductor
● Keywords:
● Alias: densityplot, densityplot,formula,flowFrame-method, densityplot,formula,flowSet-method, densityplot,formula,view-method, histogram,formula,flowFrame-method, histogram,formula,flowSet-method, panel.densityplot.flowset.stack, prepanel.densityplot.flowset.stack
●
8 images
prepanel.ecdfplot.flowset
(Package: flowViz ) :
Method implementing Lattice ECDF plots for flow data
● Data Source:
BioConductor
● Keywords: dplot, methods
● Alias: ecdfplot, ecdfplot,formula,flowSet-method, panel.ecdfplot.flowset, prepanel.ecdfplot.flowset
●
3 images
flowPlot
(Package: flowViz ) :
Standard Plots for Flow Cytometry Data
flowFrame. The user may also provide various filter or filterResult arguments to customize the plot.
● Data Source:
BioConductor
● Keywords: methods
● Alias: flowPlot, flowPlot,flowFrame-method
●
2 images
flowViz-package
(Package: flowViz ) :
Visualization for flow cytometry
● Data Source:
BioConductor
flowViz.par.get
(Package: flowViz ) :
Query and set session-wide graphical parameter defaults.
flowViz.par.get is the equivalent to trellis.par.get. It queries the session wide defaults for all lattice and flowViz graphical parameters.
● Data Source:
BioConductor
● Keywords:
● Alias: flowViz.par.get, flowViz.par.set
●
4 images
These methods extend the basic graphics lines methods for drawing of filter boundaries. They allow for multiple dispatch, since not all filter types need to be evaluated for plotting, but this decision should be made internally.
● Data Source:
BioConductor
glpoints-methods
(Package: flowViz ) :
Adding points within a gate to a plot
lpoints methods for drawing of points contained within a filter. They allow for multiple dispatch, since not all filter types need to be evaluated for plotting, but this decision should be made internally. In any case, we need the raw data in the form of a flowFrame.
● Data Source:
BioConductor
These methods extend the lattice lpolygon methods for drawing of filter regions. They allow for multiple dispatch, since not all filter types need to be evaluated for plotting, but this decision should be made internally.
● Data Source:
BioConductor
providing 
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