R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 70 found.
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GatingHierarchy-class (Package: flowWorkspace) : Class GatingHierarchy

GatingHierarchy is a class for representing the gating hierarchy,which can be either imported from a flowJo workspace or constructed in R.

● Data Source: BioConductor
● Keywords:
● Alias: GatingHierarchy-class, show,GatingHierarchy-method
● 2 images

GatingSet-class (Package: flowWorkspace) : Class code{"GatingSet"

GatingSet holds a set of GatingHierarchy objects, representing a set of samples and the gating scheme associated with each.

● Data Source: BioConductor
● Keywords:
● Alias: GatingSet-class, [,GatingSet,ANY-method, [,GatingSetList,ANY-method, [[,GatingSet,character-method, [[,GatingSet,logical-method, [[,GatingSet,numeric-method
● 1 images

GatingSet,character,character-method (Package: flowWorkspace) : constructors for GatingSet

construct object from xml workspace file and a list of sampleIDs (not intended to be called by user.)

● Data Source: BioConductor
● Keywords:
● Alias: GatingSet, GatingSet,GatingHierarchy,character-method, GatingSet,character,character-method, GatingSet,flowSet,ANY-method
● 0 images

GatingSetList-class (Package: flowWorkspace) : Class code{"GatingSetList"

A list of of GatingSet objects. This class exists for method dispatching.

● Data Source: BioConductor
● Keywords:
● Alias: GatingSetList, GatingSetList-class, rbind2,GatingSetList,missing-method
● 0 images

add,GatingSet,list-method (Package: flowWorkspace) : Create a GatingSet and add/remove the flowCore gate(or population) to/from a GatingHierarchy/GatingSet.

GatingSet method creates a gatingset from a flowSet with the ungated data as the root node. add method add the flowCore gate to a GatingHierarchy/GatingSet. setGate method update the gate of one population node in GatingHierarchy/GatingSet. Rm method Remove the population node from a GatingHierarchy/GatingSet. They are equivalent to the workFlow,add and Rm methods in flowCore package. recompute method does the actual gating after the gate is added,i.e. calculating the event indices according to the gate definition.

● Data Source: BioConductor
● Keywords:
● Alias: Rm, Rm,character,GatingHierarchy,character-method, Rm,character,GatingSet,character-method, Rm,character,GatingSetList,character-method, add, add,GatingHierarchy,filter-method, add,GatingHierarchy,filters-method, add,GatingHierarchy,quadGate-method, add,GatingSet,filter-method, add,GatingSet,filterList-method, add,GatingSet,filters-method, add,GatingSet,filtersList-method, add,GatingSet,list-method, add,GatingSetList,filter-method, add,GatingSetList,filterList-method, add,GatingSetList,filters-method, add,GatingSetList,filtersList-method, add,GatingSetList,list-method
● 0 images

asinh_Gml2 (Package: flowWorkspace) : inverse hyperbolic sine transform function generator (GatingML 2.0 version)

hyperbolic sine/inverse hyperbolic sine transform function constructor. It is simply a special form of flowJo.fasinh with length set to 1 and different default values for parameters t,m,a.

● Data Source: BioConductor
● Keywords:
● Alias: asinh_Gml2
● 0 images

asinhtGml2_trans (Package: flowWorkspace) : Inverse hyperbolic sine transformation.

Used to construct inverse hyperbolic sine transform object.

● Data Source: BioConductor
● Keywords:
● Alias: asinhtGml2_trans
● 0 images

booleanFilter-class (Package: flowWorkspace) : A class describing logical operation (& or |) of the reference populations

booleanFilter class inherits class expressionFilter and exists for the purpose of methods dispatching.

● Data Source: BioConductor
● Keywords:
● Alias: booleanFilter, booleanFilter-class, char2booleanFilter, show,booleanFilter-method
● 0 images

checkRedundantNodes (Package: flowWorkspace) : try to determine the redundant terminal(or leaf) nodes that can be removed

THese leaf nodes make the gating trees to be different from one another and can be removed by the subsequent convevient call dropRedundantNodes.

● Data Source: BioConductor
● Keywords:
● Alias: checkRedundantNodes
● 0 images

clone (Package: flowWorkspace) : clone a GatingSet

clone a GatingSet

● Data Source: BioConductor
● Keywords:
● Alias: clone, clone,GatingSet-method, clone-methods
● 0 images