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Calculates dimensions of box for at a given DV position. Ensures that box does not exceed dimensions of image.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: constructBox
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0 images
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Identifies furrowing line by identifying DV position of minimum area.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: identifyFurrowPosition
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0 images
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identifyTimeMinArea
(Package: furrowSeg) :
Identify Time Point of Tissue Invagination
Identifies time point where the cell areas attain a minimum.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: identifyTimeMinArea
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0 images
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Checks if a number is odd or adds one to make it odd. Useful for constructing filters.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: isOdd, makeOdd
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0 images
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Subsets feature table to include only cells whose center are in the interior of the specified box dimensions.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: isolateBoxCells
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0 images
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Plots mean and standard deviation of area and elongation features over time.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: plotFeatureEvolution
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Converts area in pixels to microns squared and vice versa.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: area2px, px2area
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0 images
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Converts length in pixels to microns and vice versa.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: microns2px, px2microns
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0 images
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Performs segmentation on furrow images using smoothing, adaptive thresholding and watershed algorithms.
● Data Source:
BioConductor
● Keywords: furrow
● Alias: segmentFurrowAllStacks
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0 images
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providing 
.