R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Classification

Results 1 - 10 of 20 found.
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pifdr (Package: gQTLstats) :

utility for computing plug-in FDR

● Data Source: BioConductor
● Keywords: models
● Alias: pifdr
● 1 images

qqStore (Package: gQTLstats) :

create a binned QQplot for a sharded store with association and permutation statistics

● Data Source: BioConductor
● Keywords: models
● Alias: qqStore
● 0 images

queryVCF (Package: gQTLstats) :

obtain SnpMatrix from VCF genotypes

● Data Source: BioConductor
● Keywords: models
● Alias: queryVCF
● 0 images

senstab (Package: gQTLstats) :

create a plottable table for eQTL sensitivity analysis visualization

● Data Source: BioConductor
● Keywords: models
● Alias: plot, plot.senstab, sensByProbe, senstab
● 1 images

setFDRfunc (Package: gQTLstats) :

estimate and store function relating association scores to approximate plug-in FDR

● Data Source: BioConductor
● Keywords: models
● Alias: setFDRfunc
● 0 images

storeToStats (Package: gQTLstats) :

extract a vector from store results as ff (out of memory reference); support statistical reductions

● Data Source: BioConductor
● Keywords: models
● Alias: storeToFDR, storeToFDRByProbe, storeToHist, storeToQuantiles
● 0 images

transAssoc (Package: gQTLstats) :

compute 'trans' SNP-feature associations by wrapping AllAssoc, retaining only the strongest associations (and similarly filtered association scores computed under permutation)

● Data Source: BioConductor
● Keywords: models
● Alias: transAssoc
● 0 images

txsPlot (Package: gQTLstats) :

visualize transformed FDR against transformed association statistics

● Data Source: BioConductor
● Keywords: graphics
● Alias: txsPlot
● 1 images

FDRsupp-class (Package: gQTLstats) : Class code{"FDRsupp"

Support for FDR computations with ciseStore instances

● Data Source: BioConductor
● Keywords: classes
● Alias: FDRsupp-class, getFDRfunc, getFDRfunc,FDRsupp-method, getTab, getTab,FDRsupp-method
● 0 images

TransStore-class (Package: gQTLstats) : Class code{"TransStore"

Manage collection of related trans-gQTL results in BatchJobs registries, typically one per chromosome

● Data Source: BioConductor
● Keywords: classes
● Alias: TransStore-class, describe, describe,TransStore-method
● 0 images