print.screeningResult
(Package: geneSLOPE) :
Print function for class screeningResult class
Print function for class screeningResult class
● Data Source:
CranContrib
● Keywords:
● Alias: print.screeningResult
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Summary function for class screeningResult
● Data Source:
CranContrib
● Keywords:
● Alias: summary.screeningResult
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Performs GWAS with SLOPE on given snp matrix and phenotype. At first clumping procedure is performed. Highly correlated (that is stronger than parameter rho) snps are clustered. Then SLOPE is used on snp matrix which contains one representative for each clump.
● Data Source:
CranContrib
● Keywords:
● Alias: select_snps
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clump_snps
(Package: geneSLOPE) :
Clumping procedure for SLOPE
Clumping procedure performed on SNPs, columns of matrix X, from object of class screeningResult, which is an output of function screen_snps. SNPs are clustered based on their correlations. For details see package vignette.
● Data Source:
CranContrib
● Keywords:
● Alias: clump_snps
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screen_snps
(Package: geneSLOPE) :
Reading and screening SNPs from .raw file and
Reading .raw file that was previously exported from PLINK - see details. Additional information about SNP mapping is read from .map file.
● Data Source:
CranContrib
● Keywords:
● Alias: screen_snps
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Plot selectionResult class object
● Data Source:
CranContrib
● Keywords:
● Alias: plot.selectionResult
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Print selectionResult class object
● Data Source:
CranContrib
● Keywords:
● Alias: print.selectionResult
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Plot clumpingResult class object
● Data Source:
CranContrib
● Keywords: internal
● Alias: plot.clumpingResult
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Print phenotypeData class object
● Data Source:
CranContrib
● Keywords:
● Alias: print.phenotypeData
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A graphical user interface for performing Genome-wide Association Study with SLOPE
● Data Source:
CranContrib
● Keywords:
● Alias: gui_geneSLOPE
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providing 
.