R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 17 found.
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GetColor (Package: geneplotter) : A function to get the Red-Blue color scheme used by dChip

A simple, vectorized function that computes a Red/Blue color for plotting microarray expression data.

● Data Source: BioConductor
● Keywords: manip
● Alias: GetColor, dChip.colors, greenred.colors
● 0 images

Makesense (Package: geneplotter) : Produce Smoothed Sense/Anti-sense For All Chromosomes

'Makesense' takes either an ExpressionSet object or a matrix of gene expressions and will produce a smoothed positive and negative strands for all chromosomes.

● Data Source: BioConductor
● Keywords: dplot
● Alias: Makesense, Makesense,ExpressionSet,character-method, Makesense,ExpressionSet,missing-method, Makesense,matrix,character-method
● 0 images

alongChrom (Package: geneplotter) : A function for plotting expression data from an ExpressionSet for a

Given a particular ExpressionSet object, a chromLocation object, and a chromosome name, will plot selected ExpressionSet data using various methods.

● Data Source: BioConductor
● Keywords: utilities
● Alias: alongChrom, buildACMainLabel, cullACXPoints, dispACXaxis, doACCumPlot, doACImagePlot, doACLocalPlot, doACMatPlot, emptyACPlot, fixACPhysPoints, getACClosestPos, getACDataEnv, getACExprs, getACGeneSyms, getACPlotLabs, getACStrandVals, highlightACDups, limitACXRange, scaleACData
● 12 images

amplicon.plot (Package: geneplotter) : Create an amplicon plot

Given a two-sample test statistic and an ExpressionSet this function plots regions of the genome that are either highly expressed (in red) or have low expression (blue) differentially in the two groups.

● Data Source: BioConductor
● Keywords: hplot
● Alias: amplicon.plot
● 0 images

cColor (Package: geneplotter) : A function for marking specific probes on a cPlot.

Given a set of probes, will highlight them in the color desired on a plot which has already been created via the function cPlot().

● Data Source: BioConductor
● Keywords: utilities
● Alias: cColor
● 1 images

cPlot (Package: geneplotter) : A plotting function for chromosomes.

Given a chromLocation object, will plot all the gene locations from that object.

● Data Source: BioConductor
● Keywords: utilities
● Alias: cPlot
● 2 images

cScale (Package: geneplotter) : A function for mapping chromosome length to a number of points.

Given a number of points (generally representing the number of points on a plot's axis), and a vector of chromosome lengths - will generate a vector of the same length as the one passed in containing scaling factors for each chromosome.

● Data Source: BioConductor
● Keywords: utilities
● Alias: cScale
● 0 images

groupedHeatmap (Package: geneplotter) : Heatmap of a matrix with grouped rows and columns

The function uses grid.rect and grid.rect to draw a heatmap with grouped rows and columns.

● Data Source: BioConductor
● Keywords:
● Alias: groupedHeatmap
● 1 images

histStack (Package: geneplotter) : Stacked histogram

Stacked histogram

● Data Source: BioConductor
● Keywords: hplot
● Alias: histStack
● 2 images

imageMap-methods (Package: geneplotter) : Write an HTML IMG tag together with a MAP image map.

Write an HTML IMG tag together with a MAP image map.

● Data Source: BioConductor
● Keywords: manip
● Alias: imageMap, imageMap,matrix,connection,list,character-method, imageMap,matrix-method, imageMap-methods
● 1 images