ibdMatrix
(Package: kinship2) :
Create an IBD matrix
Transform identity by descent (IBD) matrix data from the form produced by external programs such as SOLAR into the compact form used by the coxme and lmekin routines.
● Data Source:
CranContrib
● Keywords: genetics
● Alias: ibdMatrix
●
0 images
|
|
Finds one subject from among available non-parents with indicated affection status
● Data Source:
CranContrib
● Keywords:
● Alias: findAvailAffected
●
0 images
|
|
Given a pedigree, this function creates helper matrices that descibe the layout of a plot of the pedigree.
● Data Source:
CranContrib
● Keywords: dplot
● Alias: align.pedigree
●
0 images
|
|
Find the ID of subjects in a pedigree iteratively, as anyone who is not available and does not have an available descendant by successively removing unavailable terminal nodes. pedigree.trim carries out the remove of the subjects identified by findUnavailable.
● Data Source:
CranContrib
● Keywords:
● Alias: excludeStrayMarryin, excludeUnavailFounders, findUnavailable, pedigree.trim
●
0 images
|
|
This is a utility function used in pedigree.shrink()
● Data Source:
CranContrib
● Keywords:
● Alias: bitSize
●
0 images
|
kindepth
(Package: kinship2) :
Compute the depth of each subject in a pedigree
Mark each person as to their depth in a pedigree; 0 for a founder, otherwise depth = 1 + max(father's depth, mother's depth)
● Data Source:
CranContrib
● Keywords: genetics
● Alias: kindepth
●
0 images
|
|
Plot a pedigree legend that describes the affected indiactors for a subject
● Data Source:
CranContrib
● Keywords: pedigree
● Alias: pedigree.legend
●
0 images
|
|
Identify subjects to remove from a pedigree who are available but non-informative. This is the second step to remove subjects in pedigree.shrink if the pedigree does not meet the desired bit size.
● Data Source:
CranContrib
● Keywords:
● Alias: findAvailNonInform
●
0 images
|
|
Compute the kinship matrix for a set of related autosomal subjects. The function is generic, and can accept a pedigree, pedigreeList, or vector as the first argument.
● Data Source:
CranContrib
● Keywords: genetics
● Alias: kinship, kinship.default, kinship.pedigree, kinship.pedigreeList
●
0 images
|
|
Create pedigree structure in the format needed for plotting.
● Data Source:
CranContrib
● Keywords: genetics
● Alias: as.data.frame.pedigree, pedigree, print.pedigree
●
0 images
|
providing 
.