IlluminaID2nuID
(Package: lumi) :
Matching Illumina IDs to nuID based on Illumina ID mapping library
Matching Illumina IDs to nuID based on Illumina ID mapping libraries.
● Data Source:
BioConductor
● Keywords: methods, utilities
● Alias: IlluminaID2nuID
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0 images
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LumiBatch-class
(Package: lumi) :
Class LumiBatch: contain and describe Illumina microarray data
This is a class representation for Illumina microarray data. It extends ExpressionSet.
● Data Source:
BioConductor
● Keywords: classes
● Alias: LumiBatch, LumiBatch-class, class:LumiBatch
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0 images
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MAplot-methods
(Package: lumi) :
MAplot of a ExpressionSet object
Creating pairwise MAplot of sample intensities in a ExpressionSet object
● Data Source:
BioConductor
● Keywords: hplot, methods
● Alias: MAplot, MAplot,ExpressionSet-method, MAplot-methods, MAplot.ExpressionSet
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2 images
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addAnnotationInfo
(Package: lumi) :
Add probe color channel and basic annotation information based on the annotation library of Illumina methylation microarray
Add probe color channel and basic annotation information based on the annotation library of Illumina methylation microarray
● Data Source:
BioConductor
● Keywords: methods
● Alias: addAnnotationInfo
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0 images
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addControlData2lumi
(Package: lumi) :
Add the control probe data into the controlData slot of LumiBatch object
Add the control probe profile data, outputted by BeadStudio, into the controlData slot of LumiBatch object.
● Data Source:
BioConductor
● Keywords: methods
● Alias: addControlData2lumi
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0 images
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addControlData2methyLumiM
(Package: lumi) :
Add methylation control data to a MethyLumiM object
Add methylation control data to a MethyLumiM object
● Data Source:
BioConductor
● Keywords: methods
● Alias: addControlData2methyLumiM
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0 images
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addNuID2lumi
(Package: lumi) :
Add the nuID information to the LumiBatch object
Replace the Illumina Id (Target ID or Probe Id) as nuID (nucleotide universal identifier) for indexing genes in the LumiBatch object
● Data Source:
BioConductor
● Keywords: methods
● Alias: addNuID2lumi
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0 images
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Color bias adjustment of Illumina Infinium methylaton microarrays using smooth quantile normalization smoothQuantileNormalization
● Data Source:
BioConductor
● Keywords: methods
● Alias: adjColorBias.quantile
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2 images
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Color bias adjustment of Illumina Infinium methylaton microarrays using simple shift and scaling normalization
● Data Source:
BioConductor
● Keywords: method
● Alias: adjColorBias.ssn
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2 images
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asBigMatrix-methods
(Package: lumi) :
convert the data matrix in the assayData of a ExpressionSet as BigMatrix
convert the data matrix in the assayData of a ExpressionSet as BigMatrix
● Data Source:
BioConductor
● Keywords: methods
● Alias: asBigMatrix, asBigMatrix,ExpressionSet-method, asBigMatrix-methods
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0 images
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