Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 30 found.
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format.dht.results (Package: mads) : Formats the estimated abundances of all species categories, to be consistent

Formats the estimated abundances of all species categories, to be consistent with the prorated results.
● Data Source: CranContrib
● Keywords:
● Alias: format.dht.results
● 0 images

resample.data (Package: mads) : Resamples the data for the bootstrap

Can either resample samples within strata or observations within samples
● Data Source: CranContrib
● Keywords: data, manipulation
● Alias: resample.data
● 0 images

execute.multi.analysis (Package: mads) : Performs Multiple Analyses on Distance Data

Analyses are performed for multiple species contained within the same dataset. Individual detection function analyses of each species must have already been completed using the ddf function in the mrds library. This function may then perform additional tasks such as assessing variance via a non-parametric bootstrap, including covariate variability via a parametric bootstrap, including model uncertainty and dealing with species codes which relate to unidentified sightings.
● Data Source: CranContrib
● Keywords: covariate, model, sampling,, sightings,, uncertainty, uncertainty,, unidentified, ~distance
● Alias: execute.multi.analysis
● 0 images

check.species.code.definitions (Package: mads) : Checks the list of species code deifinitions supplied by the user

Firstly, it checks that there are not multiple definitions for the same species code. Secondly, it checks that the names of the ddf models correspond to the names in the species code definitions. Lastly, it checks that definitions are provided for all species codes and if not it adds the missing definitions assuming they correspond to identified categories
● Data Source: CranContrib
● Keywords: input, validation
● Alias: check.species.code.definitions
● 0 images

check.ddf.models (Package: mads) : Checks the list of model names supplied by the user

Performs various checks on the models and model names supplied by the user, including checking that the data in each model are the same across species codes to ensure valid comparison using the AIC/AICc/BIC selection criteria.
● Data Source: CranContrib
● Keywords: data, input, validation, validation,
● Alias: check.ddf.models
● 0 images

mae.warning (Package: mads) : Warning function

Writes or stores messages for various situations that can occur
● Data Source: CranContrib
● Keywords:
● Alias: mae.warning
● 0 images

accumulate.results (Package: mads) : Enters the prorated results into the bootstrap.results array

Enters the prorated results into the bootstrap.results array
● Data Source: CranContrib
● Keywords:
● Alias: accumulate.results
● 0 images

summary.ma.unid (Package: mads) : Summary of multi-analysis object

Provides asummary of the fitted detection probability model parameters, model selection criterion, and optionally abundance in the covered (sampled) region and its standard error for all species.
● Data Source: CranContrib
● Keywords: utility
● Alias: summary.ma.unid
● 0 images

check.convergence (Package: mads) : Checks whether the model has converged

Checks whether the model has converged
● Data Source: CranContrib
● Keywords:
● Alias: check.convergence
● 0 images

calculate.dht (Package: mads) : Calculates the abundance for each species code including the unidentified

Calculates the abundance for each species code including the unidentified codes if supplied.
● Data Source: CranContrib
● Keywords:
● Alias: calculate.dht
● 0 images