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Creates a list which contains the data series of a scatterplot, to be used for serialization with highcharts JavaScript plotting. framework. Internal use only.
● Data Source:
BioConductor
● Keywords:
● Alias: make.highcharts.points
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Returns a character vector with an html formatted table. Essentially, it collapses the input rows to a single character and puts a <tbody></tbody> tag set around. It is meant to be applied to the output of make.html.rows. Internal use.
● Data Source:
BioConductor
● Keywords:
● Alias: make.html.body
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Returns a character matrix with html formatted table cells. Essentially, it converts the input data to text and places them in a <td></td> tag set. Internal use.
● Data Source:
BioConductor
● Keywords:
● Alias: make.html.cells
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Returns a character vector with an html formatted table head row. Essentially, it collapses the input row to a single character and puts a <th></th> tag set around. It is meant to be applied to the output of make.html.cells. Internal use.
● Data Source:
BioConductor
● Keywords:
● Alias: make.html.header
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Returns a character vector with html formatted rows. Essentially, it collapses every row of a matrix to a single character and puts a <tr></tr> tag set around. It is meant to be applied to the output of make.html.cells. Internal use.
● Data Source:
BioConductor
● Keywords:
● Alias: make.html.rows
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Returns a character vector with a fully html formatted table. Essentially, it binds the outputs of make.html.cells, make.html.rows, make.html.header and make.html.body to the final table and optionally assigns an id attribute. The above functions are meant to format a data table so as it can be rendered by external tools such as DataTables.js during a report creation. It is meant for internal use.
● Data Source:
BioConductor
● Keywords:
● Alias: make.html.table
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make.matrix
(Package: metaseqR) :
Results output build helper
Returns a list of matrices based on the export scales that have been chosen from the main function and a subset of samples based on the sample names provided in the sample.list argument of the main metaseqr function. Internal use.
● Data Source:
BioConductor
● Keywords:
● Alias: make.matrix
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Helper for make.project.path. Internal use only.
● Data Source:
BioConductor
● Keywords:
● Alias: make.path.struct
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This function creates a permuted read counts matrix based on the contrast argument (to define new virtual contrasts of the same number) and on the sample.list to derive the number of samples for each virtual condition.It is a helper for the meta.perm function.
● Data Source:
BioConductor
● Keywords:
● Alias: make.permutation
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Create the main metaseqr project path. Internal use only.
● Data Source:
BioConductor
● Keywords:
● Alias: make.project.path
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providing 
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