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Last data update: 2014.03.03

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Results 1 - 10 of 24 found.
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MethyGenoSet-class (Package: methyAnalysis) : Class MethyGenoSet: contain and describe Illumina Infinium methylation data in GenoSet-class

This is a class representation for Illumina Infinium methylation microarray data. It directly extends GenoSet. The purpose of this class is to make the high-density methylation microarray data MethyLumiM-class compatible with the Biocoductor infrastructure packages designed for sequencing analysis.

● Data Source: BioConductor
● Keywords: classes
● Alias: MethyGenoSet, MethyGenoSet-class, class:MethyGenoSet
● 0 images

MethyLumiM2GenoSet (Package: methyAnalysis) :

Coerce objects of MethyLumiM-class to MethyGenoSet

● Data Source: BioConductor
● Keywords: methods
● Alias: MethyLumiM2GenoSet
● 0 images

annotateDMRInfo (Package: methyAnalysis) :

Annotate the DMR (Differentially Methylated Region) information

● Data Source: BioConductor
● Keywords: methods
● Alias: annotateDMRInfo
● 0 images

annotateGRanges (Package: methyAnalysis) :

Annotate a GRanges object based on a transcription database

● Data Source: BioConductor
● Keywords: methods
● Alias: annotateGRanges
● 0 images

asBigMatrix-methods (Package: methyAnalysis) : convert the data matrix in the assayData of a GenoSet as BigMatrix

convert the data matrix in the assayData of a GenoSet as BigMatrix

● Data Source: BioConductor
● Keywords: methods
● Alias: asBigMatrix, asBigMatrix,GenoSet-method, asBigMatrix-methods
● 0 images

buildAnnotationTracks (Package: methyAnalysis) :

Build annotation tracks for visualizing using Gviz package

● Data Source: BioConductor
● Keywords: methods
● Alias: buildAnnotationTracks
● 0 images

checkChrName (Package: methyAnalysis) :

Check chromosome names and make sure chromosome names start with "chr" (or not if addChr is FALSE)

● Data Source: BioConductor
● Keywords: methods
● Alias: checkChrName
● 0 images

createTranscriptTrack (Package: methyAnalysis) :

Create a transcript track, which is a GeneRegionTrack object

● Data Source: BioConductor
● Keywords: methods
● Alias: createTranscriptTrack
● 0 images

detectDMR.slideWin (Package: methyAnalysis) :

Detect DMR (Differentially Methylated Region) using slide window smoothing

● Data Source: BioConductor
● Keywords: methods
● Alias: detectDMR.slideWin
● 0 images

estimateCMR.methylation (Package: methyAnalysis) :

Estimate the averaged methylation levels within a chromosome region defined as a GRanges object or transcript promoter

● Data Source: BioConductor
● Keywords: methods
● Alias: estimateCMR.methylation
● 0 images