R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
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Classification

Results 1 - 10 of 13 found.
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contingency.table (Package: miRtest) : Contingency table.

Contingency table. Necessary for Fisher test.

● Data Source: CranContrib
● Keywords:
● Alias: contingency.table
● 0 images

miR.test (Package: miRtest) : Main Function of miRtest package.

Main Function of miRtest package.

● Data Source: CranContrib
● Keywords:
● Alias: miR.test
● 0 images

gs.test (Package: miRtest) : Internal function for gene set testing.

Internal function for gene set testing.

● Data Source: CranContrib
● Keywords:
● Alias: gs.test
● 0 images

limma.one.sided (Package: miRtest) : Internal algorithm: Make limma test one-sided...

Internal algorithm: Make limma test one-sided

● Data Source: CranContrib
● Keywords:
● Alias: limma.one.sided
● 0 images

fisher.combination (Package: miRtest) : Fisher method of p value combination.

Fisher method of p value combination.

● Data Source: CranContrib
● Keywords:
● Alias: fisher.combination
● 0 images

limma.test (Package: miRtest) : internal algorithm for author's convenience.

internal algorithm for author's convenience. Create a linear model with the limma package.

● Data Source: CranContrib
● Keywords:
● Alias: limma.test
● 0 images

m.combine (Package: miRtest) : Internal function for author's convenience and more legible code.

Internal function for author's convenience and more legible code. Applies a function to every column vector of a matrix and a vector.

● Data Source: CranContrib
● Keywords:
● Alias: m.combine
● 0 images

generate.A (Package: miRtest) : Turn a data...

Turn a data.frame indicating gene sets into the allocation matrix.

● Data Source: CranContrib
● Keywords:
● Alias: generate.A
● 0 images

miRtest (Package: miRtest) :

Looking for differential expression in miRNA-data can have low power. Taking their respective mRNA-gene sets on the other hand can lead to too liberal results. In Artmann et al. we proposed a method to combine both information sources and generate p-values that can detect either miRNA- and target gene set expression differences.

● Data Source: CranContrib
● Keywords: package, miRNA
● Alias: miRtest
● 0 images

X (Package: miRtest) : X

Part of expression data from Nielsen et al.

● Data Source: CranContrib
● Keywords:
● Alias: X
● 0 images