R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 21 found.
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mirbase.db (Package: mirbase.db) : Bioconductor Custom Annotation Data Package

Welcome to the mirbase.db custom annotation package. This package contains multiple organisms. The purpose is to provide detailed information about the mirRBase microRNA database (http://www.mirbase.org/). In particular, it covers the searchable database of published microRNA sequences and annotation and not the miRBase Registry and Targets database. As requested by the providers of this resource, the references below should be cited when making use of the data. Ambros et al. 2003 provides guidelines on microRNA annotation.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbase, mirbase.db
● 0 images

mirbaseCHR (Package: mirbase.db) : MicroRNA IDs to Chromosomes

mirbaseCHR is an R object that provides mappings between microRNA identifiers and the chromosome that contains the microRNA of interest.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseCHR
● 0 images

mirbaseCHRLOC (Package: mirbase.db) : MicroRNA IDs to Chromosomal Location

mirbaseCHRLOC is an R object that maps microRNA identifiers to the starting position of the microRNA. The position of a microRNA is measured as the number of base pairs.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseCHRLOC, mirbaseCHRLOCEND
● 0 images

mirbaseCLUSTER (Package: mirbase.db) : MicroRNA IDs to Clusters

mirbaseCLUSTER is an R object that provides mappings between microRNA identifiers and other microRNA identifiers within a 10kb window ('genomic cluster').

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseCLUSTER
● 0 images

mirbaseCOMMENT (Package: mirbase.db) : MicroRNA IDs to Comments

mirbaseCOMMENTS is an R object that provides mappings between microRNA identifiers and comments related to their description.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseCOMMENT
● 0 images

mirbaseCONTEXT (Package: mirbase.db) : MicroRNA IDs to Genomic Context

mirbaseCONTEXT is an R object that maps microRNA identifiers to information related to overlapping transcripts.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseCONTEXT
● 0 images

mirbaseDESCRIPTION (Package: mirbase.db) : MicroRNA IDs to Descriptions

mirbaseDESCRIPTION is an R object that provides mappings between microRNA identifiers and their full names.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseDESCRIPTION
● 0 images

mirbaseFAMILY (Package: mirbase.db) : MicroRNA IDs to Family

mirbaseFAMILY is an R object that provides mappings between microRNA identifiers and their family.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseFAMILY
● 0 images

mirbaseHAIRPIN (Package: mirbase.db) : MicroRNA IDs to Hairpin

mirbaseHAIRPIN is an R object that provides mappings between microRNA identifiers and an ASCII representation of the the folded precursor (stem-loop sequence).

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseHAIRPIN
● 0 images

mirbaseID2ACC (Package: mirbase.db) : MicroRNA IDs to Accessions

mirbaseID2ACC is an R object that provides mappings between microRNA identifiers and their Accession numbers.

● Data Source: BioConductor
● Keywords: data
● Alias: mirbaseACC2ID, mirbaseID2ACC
● 0 images