R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 10 of 30 found.
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DNAmotifAlignment (Package: motifStack) : align DNA motifs

align DNA motifs for plotting motifs stack

● Data Source: BioConductor
● Keywords:
● Alias: DNAmotifAlignment
● 0 images

colorset (Package: motifStack) : retrieve color setting for logo

retrieve color setting for logo

● Data Source: BioConductor
● Keywords:
● Alias: colorset
● 0 images

getRankedUniqueMotifs (Package: motifStack) :

to get the unique motif in a given category, eg by species.

● Data Source: BioConductor
● Keywords: misc
● Alias: getRankedUniqueMotifs
● 0 images

highlightCol (Package: motifStack) :

An alpha transparency value can be specified to a color, in order to get better color for background.

● Data Source: BioConductor
● Keywords: misc
● Alias: highlightCol
● 0 images

mergeMotifs (Package: motifStack) :

merge multiple motifs by calculate mean of each position

● Data Source: BioConductor
● Keywords: misc
● Alias: mergeMotifs
● 0 images

motifCircos (Package: motifStack) :

plot sequence logo stacks with a radial phylogenic tree and multiple color rings. The difference from plotMotifStackWithRadialPhylog is that it has more color setting and one more group of pfms.

● Data Source: BioConductor
● Keywords: misc
● Alias: motifCircos
● 1 images

motifCloud (Package: motifStack) : plot a DNA sequence logo cloud

Plot a DNA sequence logo cloud

● Data Source: BioConductor
● Keywords:
● Alias: motifCloud
● 1 images

motifPiles (Package: motifStack) :

plot sequence logo stacks with a linear phylogenic tree and multiple color sets.

● Data Source: BioConductor
● Keywords: misc
● Alias: motifPiles
● 1 images

motifSig-class (Package: motifStack) : Class code{"motifSig"

An object of class "motifSig" represents the output of function motifSignature

● Data Source: BioConductor
● Keywords: classes
● Alias: motifSig-class
● 0 images

motifSig-methods (Package: motifStack) : "motifSig" methods

methods for motifSig objects.

● Data Source: BioConductor
● Keywords: classes
● Alias: $,motifSig-method, $<-,motifSig-method, frequence, frequence,motifSig-method, motifSig, nodelist, nodelist,motifSig-method, sigColor, sigColor,motifSig-method, signatures, signatures,motifSig-method
● 0 images